Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02320 ATGTTACGTTCTTTATTGTGTCTGCAACTATTGATCAAGCTCTTGACAATGGGGGGTGATGATAGTCTAAAGACATGGGTATCAGAAAAATTGATGTCCCTACTGGGATATTCTCAGCCCACAGTCGTACAGTACATGATTGGACTATCCAAACAAGCTACTTCACCAGCTGATTTGGTGGGCAAGCTAGTGGAGTTCGGGATCTCGTCTGTGGATACTCATGCATTTGCAGAAGAAATTTACTCCAGAGTTCCTCGCAAATCATCTGGTTTAAATCAATATCAAAAACAAGAGAGAGAAGCTGTAATGTTGGCCAGGAAGCAGAAGACTTACACAATTTTGAAGGCTGATGACGATAGTGATGATGAATCTGTGGATAAATCTTCATTAACTACTACTTCTTCATCTAGAAGGCCTGAAAATCATAAAAAAAAGCGTTTCAGGAAGAAAACTGAAGTTGAAGATGATCAAGACGACGAGGGGATTTTGAGAAAGGAAAGTGAGAGACAAGTGAAGAGAAGAACTTCCCCTGATGATGATAATGATTCGGAGTCTGAAGAAGAAATGTTGAAAGATCAAAGAGAGAAGGAGGAATTAGAGCAGCATATGAGAGAACGAGATGCAGCTGGGACACGGAAGTTGACTGAACATAAATTATCACGAAAGGAGGAAGAAGAGGCAATTCGAAGATCTAGTGCTGCTGAGCGGGATGATATTCAAGCTTTGAGAAAGGTTTCACGGCAAGAATACTTGAAGAAAAGGGAGGAAAAGAAATTAGAAGAACTGAGAGATGATATAGAAGATGAGCAATATCTGTTTGAAGGCGTGAAGCTTTCAGAAGCAGAATATCGTGAACTGAGGTACAAGAAAGAGATATATGAACTTGTGAAGAAGCGCACAGAGGAGGCTGACAATGTGAATGAGTATAGAATACCAGAAGCTTATGATGAGGAAGGTGGTGTTAACCAGGAGAAGAGATTTTCTGTGGCTATGCAGCGTTACAGGGATCCAAATGCTGAGGATAAAATGAATCCATTTGCTGAACAAGAGGCTTGGGAGGAACATCAAATTGGTAAGGCAACGCTGAAGTTTGGTTCAAAAAATAAAAAAGTCTCTGATGATTATCAGTATGTGTTTGAGGACCAGATTGATTTTATCAAGGCGTCAGTAATGGATGGAGATAAGTTTGATTATGAAGAGATGGAAGATTCTCTTGAAAAGTCCAGAGCAAAATCAGCTTTGGAGGCACTTCAGGAGGAGAGGAAAAAGTTACCCATGTACCGCTATCGGGATGAATTGCTCCAAGCTATTCAAGATCACCAGGTACTTGTAATTGTTGGAGAAACTGGTTCCGGAAAGACAACACAGATCCCCCAATATCTTCATGATGCTGGCTACACAAAGCATGGAATGATTGCATGTACTCAGCCACGGCGTGTAGCAGCTATGAGTGTTGCTGCTCGAGTTTCTCAAGAAATGGGTGTTAAATTAGGACATGAGGTTGGTTACTCCATCCGTTTTGAAGATTGTACATCAGAGAAAACCATTCTGAAATATATGACTGATGGAATGTTACTGAGGGAATTTCTTGGTGAGCCTGATCTAGCAAGTTATAGTGTTGTAATGGTGGATGAGGCTCACGAAAGAACACTCTCAACTGATATTTTGTTTGGATTAGTAAAGGATATTGCTCGTTTCCGGCCTGATCTCAAGTTGCTGATATCAAGTGCTACACTTGATGCAGAGAAATTCAGTGATTACTTTGATTCTGCACCAATATTCAGAATTCCAGGGAGAAGATATCCTGTTGAAATAAACTACACCAAAGCACCTGAGGCTGATTACTTGGATGCCGCTATTGTCACCTCACTTCAAATCCATGTCACTCAACCTCCTGGAGATATATTGGTATTCTTCACTGGTCAAGAAGAAATTGAAACGGCAGAAGAAATCTTGAAGCATAGAACTAGAGGCTTGGGGACTAAAATTGCTGAGTTAATAATATGCCCTATATATGCCAATCTTCCAACTGAATTACAGGCTAAAATATTTGAACCCACTCCTGAAGGAGCTCGAAAGGTGGTCCTTGCTACTAATATTGCAGAAACGTCATTGACAATTGATGGGATCAAGTATGTCATTGATCCAGGATTCTGTAAGATGAAAAGTTATAATCCAAGAACAGGAATGGAGTCTTTGCTAGTAACTCCCATCTCAAAAGCTTCAGCAAATCAAAGAGCTGGTCGTTCTGGTAGAACAGGTCCTGGAAAGTGCTTCCGACTGTACACTGCATACAATTTTCACAATGATTTGGAGGAAAATACTGTTCCTGAAATACAGAGGACGAACCTTGCAAATGTAGTTTTGACTTTAAAAAGTCTTGGTATTCATGACTTGTTGAACTTTGATTTTATGGATCCCCCCCCTGCTGAGGCCTTATTAAAAGCTCTGGAGCTTTTATTTGCATTAAGTGCATTGAATAAGCTAGGCGAGTTAACCAAGGTGGGTAGACGGATGGCAGAGTTCCCACTTGATCCTATGTTATCAAAAATGATAGTCGCCTCAGAAAATTTCAAGTGTTCAGATGATATCATTTCAATTGCTGCCATGCTTTCTGTTGGAAACTCAATATTTTACCGTCCAAAGGATAAACAAGTACATGCAGACAATGCAAGGATGAATTTTCACACTGGAAATGTTGGAGACCATATTGCATTGCTAAAGGTCTACAATTCGTGGAAGGAGACCAATTATTCAACGCAGTGGTGTTATGAAAACTATATACAGGTAAGGAGTATGAAACGGGCTAGGGATGTCCGTGATCAACTGGCAGGTCTTTTAGAGAGGGTTGAGATTGAACTTACATCAAATGAAAGTGATTTAGATGCTATCAAGAAATCTATTACTTCTGGATTTTTCCCACACTCTGCTCGACTGCAAAAGAATGGATCTTATCGAACTGTTAAACATTCACAGACTGTTCACATACATCCTAGTGCGGGGCTGGCACAGGTTCTTCCTAGATGGGTTATATACCACGAACTAGTACTCACAACCAAGGAATATATGAGACAGGTGACAGAGTTAAAGCCAGATTGGTTGGTGGAGATAGCGCCCCACTATTACCAGCTTAAGGATGTTGAAGACTCGTCTTCGAAGAAAATGCCTCGTGGAGCAGGCCGTGCACAAGAGGACAAATAA 3201 0.4067 MLRSLLCLQLLIKLLTMGGDDSLKTWVSEKLMSLLGYSQPTVVQYMIGLSKQATSPADLVGKLVEFGISSVDTHAFAEEIYSRVPRKSSGLNQYQKQEREAVMLARKQKTYTILKADDDSDDESVDKSSLTTTSSSRRPENHKKKRFRKKTEVEDDQDDEGILRKESERQVKRRTSPDDDNDSESEEEMLKDQREKEELEQHMRERDAAGTRKLTEHKLSRKEEEEAIRRSSAAERDDIQALRKVSRQEYLKKREEKKLEELRDDIEDEQYLFEGVKLSEAEYRELRYKKEIYELVKKRTEEADNVNEYRIPEAYDEEGGVNQEKRFSVAMQRYRDPNAEDKMNPFAEQEAWEEHQIGKATLKFGSKNKKVSDDYQYVFEDQIDFIKASVMDGDKFDYEEMEDSLEKSRAKSALEALQEERKKLPMYRYRDELLQAIQDHQVLVIVGETGSGKTTQIPQYLHDAGYTKHGMIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFRIPGRRYPVEINYTKAPEADYLDAAIVTSLQIHVTQPPGDILVFFTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASANQRAGRSGRTGPGKCFRLYTAYNFHNDLEENTVPEIQRTNLANVVLTLKSLGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASENFKCSDDIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDVRDQLAGLLERVEIELTSNESDLDAIKKSITSGFFPHSARLQKNGSYRTVKHSQTVHIHPSAGLAQVLPRWVIYHELVLTTKEYMRQVTELKPDWLVEIAPHYYQLKDVEDSSSKKMPRGAGRAQEDK 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02320 1066 Pfam Helicase associated domain (HA2) 816 890 IPR007502 GO:0004386
Phco7g02320 1066 Coils Coil 245 272 - -
Phco7g02320 1066 SMART ultradead3 422 606 IPR014001 -
Phco7g02320 1066 SMART helicmild6 646 754 IPR001650 -
Phco7g02320 1066 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 381 599 - -
Phco7g02320 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 948 IPR027417 -
Phco7g02320 1066 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 964 1041 IPR011709 -
Phco7g02320 1066 CDD SF2_C_RHA 601 762 - -
Phco7g02320 1066 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 539 548 IPR002464 -
Phco7g02320 1066 MobiDBLite consensus disorder prediction 187 239 - -
Phco7g02320 1066 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 620 795 IPR001650 -
Phco7g02320 1066 SMART ha2_5 815 907 IPR007502 GO:0004386
Phco7g02320 1066 MobiDBLite consensus disorder prediction 118 239 - -
Phco7g02320 1066 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 777 820 - -
Phco7g02320 1066 PANTHER ATP-DEPENDENT RNA HELICASE 335 1041 - -
Phco7g02320 1066 MobiDBLite consensus disorder prediction 147 180 - -
Phco7g02320 1066 Pfam Helicase conserved C-terminal domain 627 754 IPR001650 -
Phco7g02320 1066 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 600 775 - -
Phco7g02320 1066 Gene3D - 600 775 IPR027417 -
Phco7g02320 1066 Gene3D - 382 599 IPR027417 -
Phco7g02320 1066 Gene3D - 799 957 - -
Phco7g02320 1066 Coils Coil 933 953 - -
Phco7g02320 1066 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 799 900 - -
Phco7g02320 1066 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 434 597 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02320 Phco-Chr7 40785518 40810628 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02320 7 40785518 40810628 Phco7g02320 7 40785518 40810628 ECH