Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00612 ATGGTGGATGAGGCTCACGAAAGAACACTCTCAACTGATATTCTGTTTGGATTAGTAAAGGATATTGCTCGTTTCCGGCCTGATCTCAAGTTGCTAATATCAAGTGCTACACTTGATGCCGAGAAATTCAGTGATTACTTTGATTCTGCACCAATATTCAAAATTCCAGGGAGACGATATCCTGTTGAGATAAACTTTACAAAAGCTCCAGAGGCTGACTACTTAGATGCAGCTATTGTCACCTCACTTCAAATCCATGTCACTCAACCTCCTGGAGATATATTGGTTTTCCTTACTGGTCAAGAAGAAATTGAAACGGCTGAAGAAAACTTGAAGCAGCGAACTAGAGGCTTGGGGACTAAAATTGCCGAGTTAATAATATGCCCTATATATGCCAACCTACCAACTGAACTACAAGCTAAAATATTTGAACCCACTCCTGAAGGAGCCCGAAAGATTGTACTTGCTACTAATATTGCAGAAGCATCATTGACAATTGATGGGATCAAGTATGTCATTGATCCTGGATTTTGTAAGATGAAAAGTTATAACCCGAGAACAGGAATGGAGTCTTTGCTAATAACTCCTATCTCAAAAGCTTCAGCAATGCAAAGAGCTGGTCGTTCTGGAAGAACTGGTCCAGGAAAGTGCTTTAGATTATATACTGCATACAATTTTCAAAATGATTTGGATGATAACACTGTGCCAGAAATACAGCGGTCTAATCTCGCCAGTGTTGTATTGTCTTTAAAAAGTCTTGGTATTCATGACTTGATGCATTTTGATTTCATGGATCCTCCACCTTCTGAGGCCTTATTGAAAGCTCTGGAGCTTCTATTTGCATTAAGTGCACTAAATAAGCTTGGGGAGTTAACTAAAGTGGGTAGACGGATGGCAGAGTTCCCACTTGATCCTATGTTGTCAAAAATGATAGTGGCTTCAGAAAAGTACAAATGTTCAGACGATATCATTTCTATTGCTGCTATGCTTTCTGTTGGAAACTCAATATTTTACCGTCCAAAGGATAAGCAAGTGCATGCAGACAATGCATGGATGAATTTTCACACTGGAAATGTGGGAGACCATATTGCATTGCTAAAGGTCTACAATTCATGGAAGGAGACCAATTTTTCAACACAATGGTGTTATGAAAATTATATACAGTCAAGGGTTTTGAGTTGTTTCTACGCACTTGCTAAGTGTGTCCTCGGCTGA 1215 0.3942 MVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTSLQIHVTQPPGDILVFLTGQEEIETAEENLKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKIVLATNIAEASLTIDGIKYVIDPGFCKMKSYNPRTGMESLLITPISKASAMQRAGRSGRTGPGKCFRLYTAYNFQNDLDDNTVPEIQRSNLASVVLSLKSLGIHDLMHFDFMDPPPSEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASEKYKCSDDIISIAAMLSVGNSIFYRPKDKQVHADNAWMNFHTGNVGDHIALLKVYNSWKETNFSTQWCYENYIQSRVLSCFYALAKCVLG 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00612 404 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 56 IPR014001 -
Cca03g00612 404 Gene3D - 59 234 IPR027417 -
Cca03g00612 404 Gene3D - 1 58 IPR027417 -
Cca03g00612 404 PANTHER ATP-DEPENDENT RNA HELICASE 1 392 - -
Cca03g00612 404 Pfam Helicase conserved C-terminal domain 86 213 IPR001650 -
Cca03g00612 404 PANTHER OS05G0389800 PROTEIN 1 392 - -
Cca03g00612 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 390 IPR027417 -
Cca03g00612 404 Pfam Helicase associated domain (HA2) 275 347 IPR007502 GO:0004386
Cca03g00612 404 CDD SF2_C_RHA 60 221 - -
Cca03g00612 404 SMART ha2_5 274 366 IPR007502 GO:0004386
Cca03g00612 404 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 79 254 IPR001650 -
Cca03g00612 404 Gene3D - 256 357 - -
Cca03g00612 404 SMART helicmild6 105 213 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00612 Cca-Chr3 10611281 10614319 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00612 K12813 - gmx:100809559 720.309