Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0994 AGCAGACTACTTAGATGCCGCTATTGTCACGTCACTTCAATCCATGTCACTCAGCCTCCTGGAGATATATTGATATTCCTTACTGATCAAGAAGAAATTGAAACAGCAGAAGAAATCTTGAAGCATCGAACTAGAGGCTTGGGGACTAAAATTGCTGAGTTAATAATATGCCCCATTTATGCCAACCTTCCAACTGAACTACAAGCTAAAATATTTGAAGCCACTCCTGAAGGGGCGCGAAAGTTAAGAACAGGAATGGAGTCTTTGCTAGTAACTCCCATCTCAAAAGCTTCAGCAAATCAAAGAGCTGGTCGTTCGGGAAGAACGGGTCCTGGTAAGTGCTTCCGACTGTATACTGCATACAATTTTCACAATGATTTGGATGATAACACTGTACCAGAAATACAGCGGACTAACCTTGCAAATGTAGTTTTGACTTTAAAAAGTCTTGGTATTCATGACTTATTGAACTTTGATTTTATGGATCCTCCACCTGCTAAGGCCTTATTGAAAGCTTTGGAGCTTCTATTTGCATTAAGTGCGTTAAATAAGCTTGGTGAGTTAACTAAAGTGGGTAGACGAATGGCAGAGTTCCCACTTGATCCTATGCTGTCAAAGATGATAGTAGCTTCAGAAAATTACAAGTGTTCAGAAGATATCATTTCTATTGCTGCTATGCTTTCTGTTGGAAACTCAATATTTTACCGTCCAAAAGATAAACAAGTACACGCAGACAATGCAAGGATGAATTTTCACAGTGGAAATGTTGGAGACCATATTGCGTTGCTAAAGGTGTTCAATTCATGGAAGGTGAGCAATTATTCAACGCAATGGTGTTATGAGAAATATATACAGGTAAGGAGTATGAAACAGGCTAGGGATATCCGTGATCAACTAGCAGGCCTTTTAGAGAGGGTTGAGATTGAATTAACTTCAAATGCTAATGATTTAGATGGCATCAAGAAATCCATTACATCTGGATTTTTCCCACACTCTGCACGCCTGCAAAAGAATGGATCATATCGAACTGATAAAAATTCACAGACTGTTCGCATACATCCTAGTTCAGGGCTGGCACAGGCTCTTCCTAAATGGGTTGTATACAGTGAGTTAGTACTCACAACCAAGGAATATATGAGACAGATGACAGAGTTAAAGCCAGATTGGTTGGTGGAGATAGCCCCCCACTATTACCAGCTTAAGGACGTTCAAGACTCATCTTCCAAGAAAATGCCTCTGCCTCGTGGAGCATCATAA 1257 0.4025 SRLLRCRYCHVTSIHVTQPPGDILIFLTDQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEATPEGARKLRTGMESLLVTPISKASANQRAGRSGRTGPGKCFRLYTAYNFHNDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLNFDFMDPPPAKALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASENYKCSEDIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHSGNVGDHIALLKVFNSWKVSNYSTQWCYEKYIQVRSMKQARDIRDQLAGLLERVEIELTSNANDLDGIKKSITSGFFPHSARLQKNGSYRTDKNSQTVRIHPSSGLAQALPKWVVYSELVLTTKEYMRQMTELKPDWLVEIAPHYYQLKDVQDSSSKKMPLPRGAS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0994 418 CDD SF2_C_RHA 14 118 - -
Aed10g0994 418 Gene3D - 153 314 - -
Aed10g0994 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 301 IPR027417 -
Aed10g0994 418 Coils Coil 289 309 - -
Aed10g0994 418 Pfam Helicase associated domain (HA2) 172 246 IPR007502 GO:0004386
Aed10g0994 418 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 320 397 IPR011709 -
Aed10g0994 418 PANTHER ATP-DEPENDENT RNA HELICASE 83 413 - -
Aed10g0994 418 PANTHER ATP-DEPENDENT RNA HELICASE 13 81 - -
Aed10g0994 418 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH1-LIKE 83 413 - -
Aed10g0994 418 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH1-LIKE 13 81 - -
Aed10g0994 418 Gene3D - 2 81 IPR027417 -
Aed10g0994 418 Gene3D - 82 131 IPR027417 -
Aed10g0994 418 SMART ha2_5 171 263 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0994 Aed-Chr10 8725750 8727095 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0994 K12813 - gmx:100809559 712.99