LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy10g1963	ATGGGGAGTGATGACAATCTGAAGGCATGGGTATCAGATAAGTTGATGTCACTGCTTGGATATTCTCAGCCCACAGTTGTACAGTACATGATTGGACTATCCAAGCAGGCTGCTTCACCAGCAGATTTGGCGGGTAAACTAGTGGAGTTTGGGATCTCATCGTCAGATACTCATGCATTTGCTGATGAAATATTCTCTCGAGTTCCTCATAAATCTTTTGGTTTAAATCAATATCAGAAACAAGAGAGAGAAGCTGCAATGTTGGTAAGGAAGCAGAGGACTTATGACATTTTGAAGGCTGATGATGATGATGATTATGTTGGTGGTGAAGATAAATCTTCCAAAGCTACTACATCAACGTCTAAAAAGATTGATAGCCGTAACAAACGTTTCAGGAAGAAAACTGAATATCAAGATGATGAAGATGATGAGGTAATTTCAAGAAAGGAAATGGAGAGACAAGTTAAGAGACGAACTTCTCCCGGTGAAGATACTGGATCAGAGTCAGAAGAAGAAAGATTAAAAGATCAAAGAGAGAAGGAGGAACTAGAGCAACATCTGAAAGAAAGAGATGCAGCAGGGACCCGGAAGTTGACTGAACAAAAATTGACAAGAAGGGAAGAAGAAGAGGCAATTCGAAGATCTACTGCACAAGAGCAGGATGATATTCAAGCTTTGAGAAAGGTTTCAAGGCAAGAATACTTGAAGAAAAGGGAGGAGAAGAAGTTAGAAGAACTGAGAGATGATATAGAAGATGAACAATATTTGTTTGAGGGCGTGAAGCTTACTGAAGCAGAATATCGTGAGCTTAGATACAAGAAAGAAATATATGAACTTGTAAAGAAGCGGTCAGAGGAGGCTGACAATGTCAATGAGTATAGGATGCCAGAAGCTTATGATCAGGAAGGTGGTGTTAATCAGGAGAAGAGATTTTCTGTGGCTATGCAACGTTACAGGGATACAAATGCTGAGGAGAAAATGAACCCATTTGCTGAACAAGAGGCATGGGAGGAACACCAAATCGGAAAGGCAACGCTAAAGTATGGTTCAAAAAATAAAAAACAATTCGCCGATGACTATCAGTTTGTTTTCGAGGACCAGATTGATTTTATCAAGGCATCAGTGATGGATGGAGATAATTTTGATTATGAAGAAATGGAAGATGCACTTGAAAAGTCCAGAGCAAAGTCAGCTTTAGAGGCACTTCAGGAGGAGAGGAAAAAGTTGCCCATTTATCCTTATCGGGAGGAATTGCTCCAAGCCGTGCGTGATCATCAGGTGCTTGTAATTGTTGGAGAAACTGGTTCTGGAAAGACCACACAGATTCCCCAATATCTTCATGAGGCTGGCTACACAAAGCAAGGAATGATTGCATGTACCCAGCCACGGCGTGTTGCAGCTATGAGTGTTGCTGCTCGTGTTTCTCAAGAAATGGGTGTTAAGCTAGGACATGAGGTTGGTTACTCTATCCGGTTCGAGGACTGTACATCGGAGAAGACTATTCTGAAATATATGACTGATGGAATGTTGTTGAGGGAATTCCTTGGTGAACCTGATCTGGCAAGTTACAGTGTTGTCATGGTGGATGAGGCTCATGAAAGGACACTCTCAACTGATATTTTATTTGGATTAGTAAAGGATATTTCTCGTTTCCGGCCTGATCTTAAGTTGCTGATATCTAGTGCTACACTAGATGCAGAGAAGTTCAGTGACTACTTTGATTCTGCTCCAATATTTAAAATTCCAGGGAGACGGTATCCTGTTGAAATAAACTTTACAAAAGCACCAGAAGCTGACTACTTAGATGCAGCTATTGTCACATCACTTCAAATCCATGTCACTCAACCTCCTGGTGATATCTTGGTGTTCCTTACTGGTCAAGAAGAAATCGAAACTGCTGAAGAAATCTTAAAGCATCGAACTAGAGGCTTGGGCACAAAAATTGCCGAGTTAATAATATGCCCTATATATGCCAACCTACCAACTGAGCTACAGGCTAAAATATTTGAACCCACACCTGAAGGGGCAAGAAAGGTTGTCCTTGCAACTAATATTGCTGAAACATCGTTGACAATTGATGGGATCAAGTATGTCATTGATCCAGGATTCTGTAAGATGAAAAGTTATAATCCAAGAACAGGAATGGAGTCCTTATTGGTAACACCCATCTCAAAAGCTTCAGCAATGCAAAGAGCTGGGCGTTCTGGAAGAACAGGACCTGGGAAGTGCTTCCGATTGTATACTGCATATAACTTTCACAATGATCTAGATGATAACACTGTTCCAGAAATACAACGGACTAACCTGGCAAATGTAGTGTTGACTTTGAAAAGTCTTGGTATTCATGACTTACTTCACTTTGACTTTATGGATCCTCCACCTGCAGAGGCATTATTGAAAGCCCTAGAGCTTCTGTTTGCATTAAGTGCACTAAATAAACTGGGTGAGTTAACGAAGGTAGGAAGACGGATGGCAGAGTTCCCAGTTGATCCTATGTTGTCAAAAATGATTGTAGCTTCAGAAAAGTACAAGTGTTCAGATGAGATCATTTCTATTGCTGCTATGCTTTCTGTTGGGAACTCGATTTTTTATCGTCCAAAGGATAAACAAGTCCATGCAGACAATGCAAGGATGAACTTTCACACTGGAAATGTTGGAGACCATATTGCATTGCTAAAGGTCTACAACTCATGGAAGGAGACCAACTATTCAACACAATGGTGCTATGAAAATTATATACAGGTAAGGAGTATGAAACGGGCTAGGGATGTCCGTGATCAACTCGCAGGTCTTCTAGAGCGGGTTGAGATTGAACTAACGTCAAATTCTAGCGATTTGGACGCCATCAAGAAATCCATAACATCTGGATTTTTCCCCCATTCTGCACGACTGCAAAAGAATGGATCATATCGAACTGTTAAACATCCACAGACTGTTAACATACATCCTAGTTCGGGGCTGGCACAGGTTCTTCCAAGATGGGTTGTATACCATGAACTAGTGCTTACAACCAAGGAATATATGAGACAGGTCACTGAATTAAAGCCAGAGTGGTTGGTGGAGATAGCTCCTCACTATTACCAGCTCAAGGATGTTGAAGACGCCGGTTCCAAGAAAATGCCCCGTGGAGAAGGACGTGCACAATAG	3147	0.4131	MGSDDNLKAWVSDKLMSLLGYSQPTVVQYMIGLSKQAASPADLAGKLVEFGISSSDTHAFADEIFSRVPHKSFGLNQYQKQEREAAMLVRKQRTYDILKADDDDDYVGGEDKSSKATTSTSKKIDSRNKRFRKKTEYQDDEDDEVISRKEMERQVKRRTSPGEDTGSESEEERLKDQREKEELEQHLKERDAAGTRKLTEQKLTRREEEEAIRRSTAQEQDDIQALRKVSRQEYLKKREEKKLEELRDDIEDEQYLFEGVKLTEAEYRELRYKKEIYELVKKRSEEADNVNEYRMPEAYDQEGGVNQEKRFSVAMQRYRDTNAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQFADDYQFVFEDQIDFIKASVMDGDNFDYEEMEDALEKSRAKSALEALQEERKKLPIYPYREELLQAVRDHQVLVIVGETGSGKTTQIPQYLHEAGYTKQGMIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTSLQIHVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASAMQRAGRSGRTGPGKCFRLYTAYNFHNDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLHFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPVDPMLSKMIVASEKYKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDVRDQLAGLLERVEIELTSNSSDLDAIKKSITSGFFPHSARLQKNGSYRTVKHPQTVNIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLKDVEDAGSKKMPRGEGRAQ*	1049

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy10g1963	1048	Gene3D	-	370	584	IPR027417	-
	Ahy10g1963	1048	SMART	ha2_5	800	892	IPR007502	GO:0004386
	Ahy10g1963	1048	Coils	Coil	918	938	-	-
	Ahy10g1963	1048	Coils	Coil	229	256	-	-
	Ahy10g1963	1048	Gene3D	-	585	760	IPR027417	-
	Ahy10g1963	1048	Pfam	Helicase associated domain (HA2)	801	875	IPR007502	GO:0004386
	Ahy10g1963	1048	Gene3D	-	784	943	-	-
	Ahy10g1963	1048	PANTHER	OS05G0389800 PROTEIN	107	1046	-	-
	Ahy10g1963	1048	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	419	582	IPR014001	-
	Ahy10g1963	1048	SMART	ultradead3	407	591	IPR014001	-
	Ahy10g1963	1048	PANTHER	ATP-DEPENDENT RNA HELICASE	107	1046	-	-
	Ahy10g1963	1048	ProSitePatterns	DEAH-box subfamily ATP-dependent helicases signature.	524	533	IPR002464	-
	Ahy10g1963	1048	CDD	SF2_C_RHA	586	747	-	-
	Ahy10g1963	1048	Pfam	Oligonucleotide/oligosaccharide-binding (OB)-fold	949	1026	IPR011709	-
	Ahy10g1963	1048	Pfam	Helicase conserved C-terminal domain	612	739	IPR001650	-
	Ahy10g1963	1048	SMART	helicmild6	631	739	IPR001650	-
	Ahy10g1963	1048	MobiDBLite	consensus disorder prediction	101	220	-	-
	Ahy10g1963	1048	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	404	933	IPR027417	-
	Ahy10g1963	1048	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	605	780	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy10g1963	Ahy-Chr10	105814634	105829683	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy10g1963	K12813		-	gmx:100809559	1844.71

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy20g2444	20	130278977	130293857	Ahy10g1963	10	105814634	105829683	hybridization