Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1128 ATGGGGGGTGATGATAGTCTAAAGACATGGGTATCAGATAAATTAATGTCCTTACTGGGATATTCTCAGCCCACAGTCGTACAGTACATGATTGGACTAACCAAACAAGCTACTTCACCAGCTGATTTGGTGGGCAAGCTAGTGGAGTTTGGGATCTCATCAATGGACACTCGTGCATTTGCGGAAGAAATTTACTCAAGAGTTCCTCGCAAGTCATCTGGTTTAAATCAATATCAAAAACAAGAGAGAGAAGCTGTAATGTTGGCCAGGAAGCAGAAGACTTACACAATTTTGAAGGCTGATGACGATAGTGATGATGAATCTGTGGATAAATCTTCAATAACTACTACTTCATCTGGAAGGCTTGACAATCACAGAAAAAAGCGTTTCAGGAAGAAAAATGAAGTTCAAGATGACCACGACGATGAGGTGATTTTGAGAAAGGAAAGTGAGAGACAAGTGAAGAGAAAAACTTCCTCCGGTGATGATAATGATTCGGAGTCTGAGGAAGAAAGGTTGAAAGATCAAAGAGAGAAGGAGGAATTAGAGCAGCATATGAGAGATCGAGATGCAGCTGGGACGCGGAAGTTGACTGAACATAAATTATCACGAAAGGAGGAAGAAGAGGTAATTCGAAGATCTAGTGCTGCAGAGCCGGAGGATATTCGAGCTTTGAGAAAGGTTTCAAGGCAAGAATACTTGAAGAAAAGGGAGGAAAAGAAATTAGAAGAACTAAGAGATGATATAGAAGATGAGCAATATTTGTTTGAAGGTGTGAAGCTTTCAGAAGCAGAATATCGTGAACTGAGGTACAAGAAAGAAATCTATGAACTAGTGAAGAAGCGCACAGAAGAGGCTGACAATGTGAATGAGTATAGAATGCCGGATGCTTATGATGAGGAAGGTGGCGTTAATCAGGAGAAGAGGTTTTCTGTGGCTATGCAGCGTTACAGGGATCCAAATGCTGAGGATAAAATGAATCCATTTGCTGAACAAGAGGCTTGGGAGGAACATCAAATTGGAAAGGCAACGCTGAAGTATGGTTCAAAGAATAAAAAACAAGTCTCTGATGATTATCAGTATGTGTTTGAGGACCAGATTGAATTTATAAAGGCATCAGTAATGGATGGAGATAAGTTTGATTATGAAGAGGCGGAAGATTCTCTTGAAAAGTCCAGATCGAAGTCAGCTTTGGAGGCACTTCAGGAGGAGAGGAAAAAGTTACCCATGTACCACTATCGGGATGAATTGCTCCAAGCTATTCATGATCACCAGGTACTTGTAATTGTTGGAGAAACCGGTTCCGGAAAGACAACACAGATCCCCCAATATCTTCATGAAGTTGGATACACAAAGCATGGAATGATTGCCTGTACTCAGCCACGGCGTGTTGCAGCTATGAGTGTTGCTGCCCGAGTTTCTCAAGAAATGGGTGTTAAATTAGGACATGAGGTTGGTTACTCCATCCGTTTTGAAGATTGTACATCAGAGAAAACCATTCTGAAATATATGACTGATGGAATGTTACTGAGGGAATTTCTTGGTGAGCCTGATCTAGCAAGTTATAGTGTTGTGATGGTGGATGAGGCTCACGAAAGAACACTCTCAACGGATATTTTGTTTGGATTAGTAAAGGATATTGCTCGATTCCGGCCTGATCTCAAGTTGCTGATATCAAGTGCTACACTTGATGCTGAGAAATTCAGTGATTACTTTGATTCTGCACCAATATTCAGAATTCCAGGGAGACGATATCCTGTTGAAATAAACTACACGACTGCACCTGAGGCTGACTACTTGGATGCTGCTATTGTCACCTCGCTTCAGATCCATGTCACTCAACCTCCTGGAGATATATTGGTATTCCTTACTGGACAAGAAGAAATTGAAACAGCAGAAGAAATCTTGAAGCATAGAACTAGAGGCTTGGGGACTAAAATTGCTGAGTTAATAATATGCCCTATATATGCCAATCTTCCAACTGAATTACAGGCTAAAATATTTGAACCAACTCCTGAAGGAGCACGAAAGGTGGTACTTGCAACTAATATTGCAGAAACGTCATTGACAATTGATGGGATCAAGTATGTCATTGATCCAGGATTCGTTAAGATGAAAAGCTATAATCCTAGAACAGGAATGGAATCTTTGCTAGTAACTCCCATATCAAAAGCTTCAGCCAATCAGAGGGCAGGTCGTTCTGGAAGAACAGGTCCTGGAAAGTGCTTCCGACTGTACACTGCATATAATTTTCACAATGATTTGGAGGAAAACACTGTTCCTGAAATACAGCGGACTAACCTTGCAAATGTAGTTTTGACTTTAAAAAGTCTTGGTATTCATGATTTGTTGAACTTTGATTTTATGGATCCTCCCCCTGCTGAGGCCTTATTAAAAGCTTTGGAGCTTCTATTTGCATTAAGTGCATTAAATAAGCTCGGTGAGTTAACCAAGGTCGGTAGACGGATGGCAGAGTTCCCACTTGATCCTATGTTGTCAAAAATGATAGTGGCTTCAGAAAACTTCAAGTGTTCAGATGATATCATTTCAATTGCTGCTATGCTTTCTGTTGGAAACTCAATATTTTACCGTCCAAAGGATAAACAAGTACATGCAGACAATGCAAGGATGAATTTTCACACGGGAAATGTTGGAGACCATATTGCATTGCTAAAGGTCTACAATTCGTGGAAGGAGACCAATTATTCAACGCAATGGTGTTATGAAAATTATATACAGGTAAGGAGTATGAAACGGGCAAGGGATATCCGTGATCAACTGGCAGGTCTTTTAGAAAGGGTTGAAATTGAACTAATTTCAAATGAAAGTGATTTAGATGCCATCAAGAAATCTATTACTTCCGGGTTTTTCCCACACTCTGCTCGACTCCAAAAGAATGGATCTTATCGAACTATCAAACATCCACAGACTGTTCACATACATCCTAGTGCAGGGCTGGCAGAGGTTCTTCCTAGATGGGTTATATACCATGAACTAGTACTCACAACCAAGGAATATATGAGACAGGTGACAGAATTAAAGCCGGAGTGGTTGGTGGAGATTGCGCCCCACTACTACCAGCTTAAGGATGTTGAAGACTCGTATTCGAAAAAAATGCCCCGAGGAGCAGGCCGTATACAAGAGGACAAATAA 3153 0.4082 MGGDDSLKTWVSDKLMSLLGYSQPTVVQYMIGLTKQATSPADLVGKLVEFGISSMDTRAFAEEIYSRVPRKSSGLNQYQKQEREAVMLARKQKTYTILKADDDSDDESVDKSSITTTSSGRLDNHRKKRFRKKNEVQDDHDDEVILRKESERQVKRKTSSGDDNDSESEEERLKDQREKEELEQHMRDRDAAGTRKLTEHKLSRKEEEEVIRRSSAAEPEDIRALRKVSRQEYLKKREEKKLEELRDDIEDEQYLFEGVKLSEAEYRELRYKKEIYELVKKRTEEADNVNEYRMPDAYDEEGGVNQEKRFSVAMQRYRDPNAEDKMNPFAEQEAWEEHQIGKATLKYGSKNKKQVSDDYQYVFEDQIEFIKASVMDGDKFDYEEAEDSLEKSRSKSALEALQEERKKLPMYHYRDELLQAIHDHQVLVIVGETGSGKTTQIPQYLHEVGYTKHGMIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFRIPGRRYPVEINYTTAPEADYLDAAIVTSLQIHVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPRTGMESLLVTPISKASANQRAGRSGRTGPGKCFRLYTAYNFHNDLEENTVPEIQRTNLANVVLTLKSLGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASENFKCSDDIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELISNESDLDAIKKSITSGFFPHSARLQKNGSYRTIKHPQTVHIHPSAGLAEVLPRWVIYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLKDVEDSYSKKMPRGAGRIQEDK* 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1128 1050 Gene3D - 584 759 IPR027417 -
Vra3g1128 1050 MobiDBLite consensus disorder prediction 102 220 - -
Vra3g1128 1050 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 604 779 IPR001650 -
Vra3g1128 1050 SMART ha2_5 799 891 IPR007502 GO:0004386
Vra3g1128 1050 Pfam Helicase associated domain (HA2) 800 874 IPR007502 GO:0004386
Vra3g1128 1050 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 523 532 IPR002464 -
Vra3g1128 1050 PANTHER ATP-DEPENDENT RNA HELICASE 112 1044 - -
Vra3g1128 1050 Pfam Helicase conserved C-terminal domain 611 738 IPR001650 -
Vra3g1128 1050 MobiDBLite consensus disorder prediction 132 163 - -
Vra3g1128 1050 CDD SF2_C_RHA 585 746 - -
Vra3g1128 1050 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 418 581 IPR014001 -
Vra3g1128 1050 SMART ultradead3 406 590 IPR014001 -
Vra3g1128 1050 Coils Coil 163 183 - -
Vra3g1128 1050 MobiDBLite consensus disorder prediction 170 220 - -
Vra3g1128 1050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 932 IPR027417 -
Vra3g1128 1050 SMART helicmild6 630 738 IPR001650 -
Vra3g1128 1050 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 948 1025 IPR011709 -
Vra3g1128 1050 Gene3D - 364 583 IPR027417 -
Vra3g1128 1050 Gene3D - 783 941 - -
Vra3g1128 1050 PANTHER OS05G0389800 PROTEIN 112 1044 - -
Vra3g1128 1050 Coils Coil 917 937 - -
Vra3g1128 1050 Coils Coil 228 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1128 Vra-Chr3 11812681 11835281 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1128 K12813 - gmx:100809559 1873.21