LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g02219	ATGGGTTGTTTCGCCAGCAAAAACGCTGACACCAAGGCCAGTAGGGCCGCGCGTTGGCGATCCACGGGCATTGTTGCTTTGCGCGATTCCAAATTAAAGACGTTTCCGGATGAAATTCTCGAGTTAGACAGATCTGTTCGCACTCTTGACTTGACGCATAATCGAATAGTTGACATTCCGGTGGAAATCAGCAAATTAATTAATGTACAGCGCCTGATATTAGCAGAGAACCTCATTGAGAGACTGCCAGTGAATTTGGGGAAACTCCAATCTCTGAAACTGATGAACCTGGATGGAAATCGAATTACTTCCTTGCCTGATGAATTGGGCCAGTTAGTAAGGCTTGAACGCATATCCATCTCAGGGAATTTGTTAACATCCTTGCCAGCAACTATTGGAAGTTTGAGAAATCTGGTGCTTTTAAATGTGTCAAATAACAAGTTACAGTCTCTTCCAGAATCTGTTGGGAGTTGCTTCTCTTTGGAAGAATTACAAGCTAATGATAATCTTATTGAAGATCTTCCCTCTTCGGTGTGCAATCTCTCTCACTTGAAGTCACTTTGCTTGGATAACAATAATGTGAAGCAGATACCTCTGAATTTATTGAAAGACTGCAAAGCTCTTCAGAACATATCACTGCATGGTAATCCTATATCAATGGATGAATTTCAGCAGATGGAGGGGTTTCAAGAGTTTGAAGCAAGGAGGAAAAAGAAGTTTGACAAACAAATTGATTCAAATGTGATGATCGGTTCCAAAGGTCTTGATGAGGGTGTTGATCTATGA	786	0.4135	MGCFASKNADTKASRAARWRSTGIVALRDSKLKTFPDEILELDRSVRTLDLTHNRIVDIPVEISKLINVQRLILAENLIERLPVNLGKLQSLKLMNLDGNRITSLPDELGQLVRLERISISGNLLTSLPATIGSLRNLVLLNVSNNKLQSLPESVGSCFSLEELQANDNLIEDLPSSVCNLSHLKSLCLDNNNVKQIPLNLLKDCKALQNISLHGNPISMDEFQQMEGFQEFEARRKKKFDKQIDSNVMIGSKGLDEGVDL	261

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g02219	261	ProSiteProfiles	Leucine-rich repeat profile.	45	66	IPR001611	GO:0005515
	Pumo10g02219	261	PANTHER	-	27	220	-	-
	Pumo10g02219	261	SUPERFAMILY	L domain-like	24	221	-	-
	Pumo10g02219	261	ProSiteProfiles	Leucine-rich repeat profile.	183	203	IPR001611	GO:0005515
	Pumo10g02219	261	ProSiteProfiles	Leucine-rich repeat profile.	137	158	IPR001611	GO:0005515
	Pumo10g02219	261	SMART	LRR_typ_2	44	65	IPR003591	-
	Pumo10g02219	261	SMART	LRR_typ_2	66	88	IPR003591	-
	Pumo10g02219	261	SMART	LRR_typ_2	181	204	IPR003591	-
	Pumo10g02219	261	SMART	LRR_typ_2	135	158	IPR003591	-
	Pumo10g02219	261	SMART	LRR_typ_2	112	134	IPR003591	-
	Pumo10g02219	261	SMART	LRR_typ_2	89	111	IPR003591	-
	Pumo10g02219	261	SMART	LRR_bac_2	160	177	-	-
	Pumo10g02219	261	SMART	LRR_bac_2	181	200	-	-
	Pumo10g02219	261	SMART	LRR_bac_2	135	154	-	-
	Pumo10g02219	261	SMART	LRR_bac_2	89	108	-	-
	Pumo10g02219	261	SMART	LRR_bac_2	112	131	-	-
	Pumo10g02219	261	Gene3D	Ribonuclease Inhibitor	5	243	IPR032675	-
	Pumo10g02219	261	Pfam	Leucine rich repeat	44	102	IPR001611	GO:0005515
	Pumo10g02219	261	ProSiteProfiles	Leucine-rich repeat profile.	91	112	IPR001611	GO:0005515

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo10g02219	46	219	Receptor kinase-like Gene Family	AT5G46330	32.195	2.41e-14	70.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g02219	-		-	gmx:100807758	479.559

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo10g02219	10	30515686	30522915	Pumo10g02219	10	30515686	30522915	ECH