Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02840 ATGGCGAGCGATGACAATCTAAAGACATGGGTTTCAGATAAGTTGATGTCACTACTTGGATATTCTCAGCACACAGTTGTACAGTACATGATTGGACTATCCAAGCAAGCTACTTCACCAGCTGATTTAGTGGGAAAGCTAGTGGATTTTGGGATTTCAACAACAGACTCCCGTGCGTTTGCGGAAGAAATTTTCTCAAGAGTTCCTCGTAGATCGTCCGGCTTAAATCAATATCAAAAACAAGAGAAAGAAGCTGCAATGTTGGCAAGGAAGCAGGCTACTTACACAATTTTGAAGGATGATGACGATATCGACGATGACCATACTGTTGGTGGTGACGATAAATCGTCGATAACTACTGCTTCTACATCTAGAAAGCCAGACAATCATAAAAAACGTTTCAGGAAGAAAACTGAAGTTCAAGATGATCAAGAAGATGAGGTAATTTCAAGGAAAGAAAGGGAAAGACAGGTTAAGAGAAGAACTTCCCCTGATGAAGAGAGTGGTTCAGAGTCAGAAGAAGAAAGATTGAAAGATCAAAGAGAAAAGGATGAATTAGTGCAGCATATGAGAGAAAAAGATGCCGCAGCAACACGGAAGTTGACTGAACAAAAATTAACACGAAAGGAGGAAGAAGAAGCAATTCGAAGATCTAATGCTGCAGAGCAGGATGATCTGCGTTCTTTGAGAAAGTATTCACGGCAAGAATACTTGAAGAAAAGGGAGGAAAAGAAATTAGAAGAACTGAGAGATGATATTGAAGATGAACAATATCTATTTGATGGTGTGAAGCTTTCAGAAGTGGAACAGCGTGAGTTAAGGCACAAGAAAGAACTATATGAACTTATAAAAAAGCGGTCAGAGGAGGTGGACAATGTGAATGAGTATAGAATGCCAGACGCTTATGATCAAGAAGGTGGCGTTAATCAAGAAAAGAGATTTTCTGTGGCTATGCAGCGTTACAGGGATACAAATGCTGAGGAAAAGATGAATCCATTTGCTGAACAAGAGGCATGGGAGGAACATCAAATTGGAAAGGCAACACTGAAGTATGGGTCCAAAAATAAAAAACTAGCCTCTGATGATTACCAGTTTGTGTTCGAGGACCAAATTGATTTTATCAAGGCATCTGTGATGGATGGAGATAAGTTTGATAACGACGAGATGGCAGATTCAATTGAAAAGTCCAAAGCAAAGTCTGCAGCAGAGGCACTTCAGGAGGAGAGGAAAAAATTACCCATTTATACTTATCGGGATGAATTGCTCCAAGCTGTTCATGACCACCAGGTACTTGTAATTGTTGGTGAAACCGGTTCTGGAAAGACTACACAAATTCCTCAATATCTTCACGAAGCTGGCTACACAAAACATGGAATGATTGCATGTACTCAGCCACGTCGTGTTGCTGCTATGAGTGTGGCTGCTCGAGTTGCTCACGAATTAGGTGTTAAACTAGGACACGAGGTTGGGTACTCCATCCGTTTTGAGGATTGCACATCAGACAAGACTATTCTGAAATATATGACAGATGGAATGTTACTGAGGGAATTTCTTGGTGAGCCTGATCTGGCAAGTTATAGTGTTGTGATGGTGGATGAGGCTCATGAAAGGACACTCTCAACTGATATTTTGTTTGCATTAGTGAAGGATATTTCTCGCTTCCGACCTGATCTTAAGTTGCTGATATCAAGTGCTACACTTGATGCAGAAAAGTTCAGTGATTACTTCGATTCTGCTCCCATATTCAAAATTCCAGGGAGAAGGTATCCAGTTGAAATACACTTTACCAAAGCACCAGAAGCTGACTACTTAGATGCAGCTATTGTAACAGCACTTCAAATCCATGTTACTCAACCTCCTGGCGATATATTAATATTCCTTACTGGTCAAGAGGAAATTGAAACGGCTGAAGAAATCTTGAAGCATCGAACTAGAGGCTTAGGGACTAAAATTGCTGAATTAATTATATGTCCTATATATGCCAACCTACCAACGGAACTGCAAGCCAAAATATTTGAACCAACTCCTGAAGGGGCACGAAAGGTTGTCCTTGCTACCAATATCGCAGAAACATCATTGACAATTGATGGAATAAAGTATGTCATCGATCCAGGATTCGTTAAGATGAAGAGTTATAATCCAAAGACAGGAATGGAGTCTTTACTAGTGTCTCCCATCTCAAAAGCTTCAGCTATGCAACGAGCTGGTCGATCTGGAAGAACAGGTCCTGGAAAGTGCTTCCGGTTGTATACTGCATACAATTTTCAAAATGATTTGGATGATAACACTGTACCCGAAATACAGAGGACTAACCTCACAAATGTAGTTTTGACTTTAAAAAGTCTTGGTATTCATGACTTGTTGCACTTTGAATTTATGGATCCTCCACCTGCTGAGGCCTTATTGAAAGCCCTGGAGCTTCTATTTGCTTTAAGTGCTTTAAATAAGCTTGGTGAGTTAACTAAAGTAGGTAGACGGATGGCAGAGTTCCCACTTGATCCTATGTTGTCAAAAATGATAGTGGTTTCAGAAAAATACAAGTGTTCAGAAGACATCATTTCCATTGCTGCTATGCTTTCTATTGGAAACTCGATATTTTACCGTCCAAAGGATAAACAAGTGCATGCAGACAATGCAAGGCTGAATTTTCACACTGGAAATGTTGGAGACCATATGGCGTTGCTCAAGGTCTACAATTCTTGGAAGGAGACCAATTATTCAACACAATGGTGTTATGAAAATTATATACAGGTAAGGAGCATGAAACGGGCGAGGGATATCCGTGATCAACTTGCAGGTCTATTAGAGAGGGTTGAGATTGAGCTTACTACAAATCCTAATGATTTAGATGCCATCAAGAAATCTATAACATCTGGATTTTTCCCACACTCTTCAAAATTGCAAAAAAATGGATCGTATCGGACACTTAAACATGGGCAGACTGTTCACATACATCCTAGTTCAGGGCTGGCACAGGTTCTCCCAAAATGGGTTGTGTACCACGAACTAGTACTCACAACCAAGGAGTATATGAGACAGATCACGGAGTTAAAGGCAGAGTGGTTGTTGGAGATAGCCCCTCACTATTACCAGCTCAAGGATGTTGAAGACACTGGTTCCAAGAAAATGCCCCGTGGAGAAGGACGTGCAAGAATCACAGACAACTAG 3168 0.4066 MASDDNLKTWVSDKLMSLLGYSQHTVVQYMIGLSKQATSPADLVGKLVDFGISTTDSRAFAEEIFSRVPRRSSGLNQYQKQEKEAAMLARKQATYTILKDDDDIDDDHTVGGDDKSSITTASTSRKPDNHKKRFRKKTEVQDDQEDEVISRKERERQVKRRTSPDEESGSESEEERLKDQREKDELVQHMREKDAAATRKLTEQKLTRKEEEEAIRRSNAAEQDDLRSLRKYSRQEYLKKREEKKLEELRDDIEDEQYLFDGVKLSEVEQRELRHKKELYELIKKRSEEVDNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTNAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKLASDDYQFVFEDQIDFIKASVMDGDKFDNDEMADSIEKSKAKSAAEALQEERKKLPIYTYRDELLQAVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQPRRVAAMSVAARVAHELGVKLGHEVGYSIRFEDCTSDKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFALVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHFTKAPEADYLDAAIVTALQIHVTQPPGDILIFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPKTGMESLLVSPISKASAMQRAGRSGRTGPGKCFRLYTAYNFQNDLDDNTVPEIQRTNLTNVVLTLKSLGIHDLLHFEFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVVSEKYKCSEDIISIAAMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHMALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELTTNPNDLDAIKKSITSGFFPHSSKLQKNGSYRTLKHGQTVHIHPSSGLAQVLPKWVVYHELVLTTKEYMRQITELKAEWLLEIAPHYYQLKDVEDTGSKKMPRGEGRARITDN 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02840 1055 PANTHER ATP-DEPENDENT RNA HELICASE 325 1028 - -
Mepo5g02840 1055 Gene3D - 786 945 - -
Mepo5g02840 1055 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 369 587 - -
Mepo5g02840 1055 Gene3D - 369 587 IPR027417 -
Mepo5g02840 1055 CDD SF2_C_RHA 589 750 - -
Mepo5g02840 1055 Gene3D - 588 763 IPR027417 -
Mepo5g02840 1055 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 608 783 IPR001650 -
Mepo5g02840 1055 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 422 585 IPR014001 -
Mepo5g02840 1055 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 527 536 IPR002464 -
Mepo5g02840 1055 Pfam Helicase associated domain (HA2) 804 878 IPR007502 GO:0004386
Mepo5g02840 1055 MobiDBLite consensus disorder prediction 134 227 - -
Mepo5g02840 1055 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 787 888 - -
Mepo5g02840 1055 MobiDBLite consensus disorder prediction 101 227 - -
Mepo5g02840 1055 SMART ha2_5 803 895 IPR007502 GO:0004386
Mepo5g02840 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 937 IPR027417 -
Mepo5g02840 1055 SMART ultradead3 410 594 IPR014001 -
Mepo5g02840 1055 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 588 763 - -
Mepo5g02840 1055 Pfam Helicase conserved C-terminal domain 614 742 IPR001650 -
Mepo5g02840 1055 Coils Coil 232 259 - -
Mepo5g02840 1055 SMART helicmild6 634 742 IPR001650 -
Mepo5g02840 1055 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 952 1029 IPR011709 -
Mepo5g02840 1055 Coils Coil 921 941 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02840 Mepo-Chr5 34408360 34427146 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02840 K12813 - gmx:100809559 1805.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g02840 5 34408360 34427146 Mepo5g02840 5 34408360 34427146 ECH