Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0590 ATGGCGAGCGATGACGATCTAAAGACATGGGTTTCAGATAAGTTGATGTCACTACTTGGATATTCTCAGCGCACAGTTGTACAGTACATGATTGGAATATCTAAGCAAGCTGCTTCACCAGCTGATTTAGTGGGAAAGCTAGTGGATTGTGGGATTTCAACAACAGACTCCCGTGCGTTTGCGGAAGAAATTTTCTCAAGAGTTCCTCGTAGATCATCCGGCTTAAATCAATATCAAAAACAAGAGAGAGAAGCTGCAATGTTGGCAAGGAAGCAGGCGACTTACACAATTTTGAAGGATGATGACGATATTGACGATGACCATACTGTTGGTGGTGACGATAAATCGTCGATAACTACTGCTTCTACATCTAGAAAGCCAGACAATCATAAAAAACGTTTCAGGAAGAAAACTGAAGTTCAAGATGATCAAGAAGATGAGGTAATTTCAAGGAAAGAAAGGGAAAGGCAGGTTAAGAGAAGAACTTCCCCTGATGAAGAGAGTGGTTCAGAGTCAGAAGAAGAAAGACTGAAAGATCAAAGAGAAAAGGATGAATTAGTGCAGCATATGAGAGAAAGAGATGCTGCAGCAACACGGAAGTTGACTGAACAAAAATTAACACGAAAGGAGGAAGAAGAAGCAATTCGAAGATCTAATGCTGCAGAGCAGGATGATCTGCGTTCTTTGAGAAAGTATTCACGGCAAGAATACTTGAAGAAAAGGGAGGAAAAGAAATTAGAAGAACTGAGAGATGATATTGAAGATGAACAATATCTATTTGATGGTGTGAAGCTTTCAGAAGTGGAACAGCGTGAGTTAAGGCACAAGAAAGAACTATATGAACTTATAAAAAAGCGGTCAGAGGAGGCAGACAATGTGAATGAGTATAGAATGCCAGACGCTTATGATCAAGAAGGCGGCGTTAATCAAGAAAAGAGATTTTCTGTGGCTATGCAGCGTTACAGGGATACAAATGCTGAGGAAAAGATGAATCCATTTGCTGAACAAGAGGCATGGGAGGAACATCAAATCGGAAAGGCAACACTGAAGTATGGCTCCAAAAATAAAAAACTAGCCTCTGATGATTACCAGTTTGTGTTCGAGGACCAAATTGATTTTATCAAGGCATCTGTGATGGATGGAGATAAGTTTGACAATGACGAGATGGCAGATTCAATTGAAAAGTCCAAAGCAAAGTCTGCAGCAGAGGCACTTCAGGAGGAGAGGAAAAAGTTACCCATTTATACTTATCGGGATGAATTGCTCCAAGCTGTTCATGACCACCAGGTACTTGTAATTGTTGGTGAAACCGGTTCTGGAAAGACTACACAAATTCCTCAATATCTTCATGAAGCTGGCTACACAAAACATGGAATGATTGCATGTACTCAGCCACGTCGTGTTGCTGCTATGAGTGTGGCTGCTCGAGTTGCTCACGAATTAGGTGTTAAACTAGGACACGAGGTTGGGTACTCCATCCGTTTTGAGGATTGCACATCAGACAAGACTATTCTGAAATATATGACAGATGGAATGTTACTGAGGGAATTTCTTGGTGAGCCTGATCTGGCAAGTTATAGTGTTGTGATGGTGGATGAGGCTCATGAAAGGACACTCTCAACTGATATCTTGTTTGCATTAGTGAAGGATATTTCTCGCTTCCGACCTGATCTTAAGTTGCTGATATCAAGTGCTACACTTGATGCAGAAAAGTTCAGTGATTACTTCGATTCTGCTCCGATATTCAAAATTCCAGGGAGAAGGTATCCAGTTGAAATACACTTTACCAAAGCACCAGAAGCTGACTACTTAGATGCAGCTATTGTAACAGCACTTCAAATCCATGTTACTCAACCTCCTGGAGATATATTAATATTCCTTACTGGTCAAGAAGAAATCGAAACGGCTGAAGAAATCTTGAAGCATCGAACTAGAGGCTTAGGGACTAAAATTGCTGAATTAATTATATGTCCTATATATGCCAACCTACCAACTGAACTACAGGCTAAAATATTTGAACCAACTCCTGAAGGGGCACGAAAGGTTGTTCTTGCTACCAATATCGCAGAAACATCATTGACAATTGATGGAATAAAGTATGTCATTGATCCAGGATTTGTTAAGATGAAGAGTTATAATCCAAAGACAGGAATGGAGTCTTTACTAGTGTCTCCCATCTCAAAAGCCTCAGCTATGCAACGAGCTGGTAGATCTGGAAGAACAGGTCCTGGAAAGTGCTTCCGGTTGTATACTGCATACAATTTTCAAAATGATTTGGATGATAACACAGTACCCGAAATACAGAGGACTAACCTCACAAATGTAGTTTTGACTTTAAAAAGTCTTGGTATTCATGACTTGTTGCACTTTGAATTTATGGATCCTCCACCTGCTGAGGCCTTATTGAAAGCCCTGGAGCTTCTATTTGCTTTAAGTGCTTTAAATAAGCTTGGTGAGTTAACTAAGGTAGGTAGACGGATGGCAGAGTTCCCACTTGATCCTATGTTGTCAAAAATGATAGTGGTTTCAGAAAAATACAAGTGTTCAGAAGACATCATTTCCATTGCTGCTATGCTTTCTATTGGAAACTCAATATTTTACCGTCCAAAGGATAAACAAGTGCATGCAGACAATGCAAGGCTGAATTTTCACACTGGAAATGTTGGAGACCATATGGCGTTGCTCAAGGTCTACAATTCTTGGAAGGAGACCAATTATTCAACACAATGGTGTTATGAAAATTATATACAGGTAAGGAGCATGAAACGGGCGAGGGATATCCGTGATCAACTTGCAGGTCTATTAGAGAGGGTTGAGATTGAGCTTACTACAAATCCTAATGATTTAGATGCCATCAAGAAATCTATAACATCTGGATTTTTCCCACACTCATCAAAATTGCAAAAAAATGGATCGTATCGGACACTTAAACATGGGCAGACTGTTCACATACATCCTAGTTCGGGGCTGGCACAGGTTCTCCCAAAATGGGTTGTGTACCATGAACTAGTACTCACAACCAAGGAGTATATGAGACAGATCACAGAGTTAAAGGCAGAGTGGTTGTTGGAGATAGCCCCTCACTATTACCAGCTCAAGGATGTTGAAGACACTGGTTCCAAGAAAATGCCCCGTGGAGAAGGACGCGCAAGAATCACAGACAACTAG 3168 0.4069 MASDDDLKTWVSDKLMSLLGYSQRTVVQYMIGISKQAASPADLVGKLVDCGISTTDSRAFAEEIFSRVPRRSSGLNQYQKQEREAAMLARKQATYTILKDDDDIDDDHTVGGDDKSSITTASTSRKPDNHKKRFRKKTEVQDDQEDEVISRKERERQVKRRTSPDEESGSESEEERLKDQREKDELVQHMRERDAAATRKLTEQKLTRKEEEEAIRRSNAAEQDDLRSLRKYSRQEYLKKREEKKLEELRDDIEDEQYLFDGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTNAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKLASDDYQFVFEDQIDFIKASVMDGDKFDNDEMADSIEKSKAKSAAEALQEERKKLPIYTYRDELLQAVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQPRRVAAMSVAARVAHELGVKLGHEVGYSIRFEDCTSDKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFALVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHFTKAPEADYLDAAIVTALQIHVTQPPGDILIFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPKTGMESLLVSPISKASAMQRAGRSGRTGPGKCFRLYTAYNFQNDLDDNTVPEIQRTNLTNVVLTLKSLGIHDLLHFEFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVVSEKYKCSEDIISIAAMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHMALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELTTNPNDLDAIKKSITSGFFPHSSKLQKNGSYRTLKHGQTVHIHPSSGLAQVLPKWVVYHELVLTTKEYMRQITELKAEWLLEIAPHYYQLKDVEDTGSKKMPRGEGRARITDN* 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0590 1055 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 952 1029 IPR011709 -
Mtr3g0590 1055 Pfam Helicase conserved C-terminal domain 614 742 IPR001650 -
Mtr3g0590 1055 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 527 536 IPR002464 -
Mtr3g0590 1055 Pfam Helicase associated domain (HA2) 804 878 IPR007502 GO:0004386
Mtr3g0590 1055 CDD SF2_C_RHA 589 750 - -
Mtr3g0590 1055 MobiDBLite consensus disorder prediction 134 223 - -
Mtr3g0590 1055 Gene3D - 588 763 IPR027417 -
Mtr3g0590 1055 SMART ha2_5 803 895 IPR007502 GO:0004386
Mtr3g0590 1055 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 608 783 IPR001650 -
Mtr3g0590 1055 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 422 585 IPR014001 -
Mtr3g0590 1055 Gene3D - 369 587 IPR027417 -
Mtr3g0590 1055 Gene3D - 786 945 - -
Mtr3g0590 1055 PANTHER ATP-DEPENDENT RNA HELICASE 112 1050 - -
Mtr3g0590 1055 SMART ultradead3 410 594 IPR014001 -
Mtr3g0590 1055 PANTHER OS05G0389800 PROTEIN 112 1050 - -
Mtr3g0590 1055 SMART helicmild6 634 742 IPR001650 -
Mtr3g0590 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 937 IPR027417 -
Mtr3g0590 1055 Coils Coil 921 941 - -
Mtr3g0590 1055 MobiDBLite consensus disorder prediction 101 223 - -
Mtr3g0590 1055 Coils Coil 232 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0590 Mtr-Chr3 7794066 7811202 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0590 K12813 - gmx:100809559 1801.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0590 3 7794066 7811202 Mtr3g0590 3 7794066 7811202 ECH