Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03313 ATGGGTTGTTTGGCCAGCAAAAACGCTGACACCAAGGCCAGCAGAACCGCGCGGTGGCGATCCACGGGCATTGTTGCTCTGCGCGATTCCAAATTGAAGACGTTTCCAGATGAAATTCTTGATTTAGATAGATCTGTACGCACTCTTGACTTAACACATAATCGAATAGTTGACATTCCTGTGGAAATTAGCAAACTAGTTAATGTGCAGCGCCTGGTATTAGCGGACAACCTCATTGAGAGACTGCCAGTTAATTTGGGGAAACTCCAATCTCTAAAACTCATAAACCTCGATGGAAATCGAATAACTTCCTTGCCTGATGAATTGGGCCAGCTAGTAAGGCTTGAACGCTTATCCATCTCAGGGAATTTGTTAACATCGTTGCCATCAACTATTGGCAGTTTGAGAAATCTGTTGCTTTTAAATGTGTCAAATAACAAGTTACAGTCTCTTCCAGAATCTGTTGGGAGTTGCTTCTCTTTGGAAGAATTACAAGCTGATGATAATCTTATTGAAGATCTTCCCTCTTCGGTGTGCAATCTCTCTCACTTGAAGTCGCTTTGCTTAGATAACAATAACGTGAAGCAGATACCTCCGAATCTATTGAAAGACTGCAAAGCTCTTCAGAACATATCACTACATGGAAATCCCATATCAATGGATCAATTTCAACAGATGGAGGGGTTTCAAGAGTTTGAAGCAAGGAGGAGAAAGAAGTTTGACAAACAAATTGATTCAAATGTAATGATCAGTTCCAAAGGTCTCGATGAGGGTGTTGATTTATGA 786 0.4109 MGCLASKNADTKASRTARWRSTGIVALRDSKLKTFPDEILDLDRSVRTLDLTHNRIVDIPVEISKLVNVQRLVLADNLIERLPVNLGKLQSLKLINLDGNRITSLPDELGQLVRLERLSISGNLLTSLPSTIGSLRNLLLLNVSNNKLQSLPESVGSCFSLEELQADDNLIEDLPSSVCNLSHLKSLCLDNNNVKQIPPNLLKDCKALQNISLHGNPISMDQFQQMEGFQEFEARRRKKFDKQIDSNVMISSKGLDEGVDL. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03313 261 ProSiteProfiles Leucine-rich repeat profile. 45 66 IPR001611 GO:0005515
Seca4g03313 261 Pfam Leucine rich repeat 44 102 IPR001611 GO:0005515
Seca4g03313 261 Pfam Leucine rich repeat 160 218 IPR001611 GO:0005515
Seca4g03313 261 ProSiteProfiles Leucine-rich repeat profile. 137 158 IPR001611 GO:0005515
Seca4g03313 261 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Seca4g03313 261 SMART LRR_typ_2 44 65 IPR003591 -
Seca4g03313 261 SMART LRR_typ_2 66 88 IPR003591 -
Seca4g03313 261 SMART LRR_typ_2 89 111 IPR003591 -
Seca4g03313 261 SMART LRR_typ_2 135 158 IPR003591 -
Seca4g03313 261 SMART LRR_typ_2 112 134 IPR003591 -
Seca4g03313 261 SMART LRR_typ_2 181 204 IPR003591 -
Seca4g03313 261 Gene3D Ribonuclease Inhibitor 4 242 IPR032675 -
Seca4g03313 261 PANTHER - 27 220 - -
Seca4g03313 261 SUPERFAMILY L domain-like 24 221 - -
Seca4g03313 261 SMART LRR_bac_2 160 177 - -
Seca4g03313 261 SMART LRR_bac_2 135 154 - -
Seca4g03313 261 SMART LRR_bac_2 181 200 - -
Seca4g03313 261 SMART LRR_bac_2 89 108 - -
Seca4g03313 261 SMART LRR_bac_2 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03313 Seca-Chr4 57062641 57070156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03313 36 221 Receptor kinase-like Gene Family AT3G47570 32.292 6.83e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03313 - - gmx:100807758 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03313 4 57062641 57070156 Seca4g03313 4 57062641 57070156 ECH