Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1828 ATGGAAGACGACGACGAGTTCGGAGATTTATACACAGACGTTCTCCTCCCTTTTGCTTCGCCCTCATCCTCTGCGCCGCAGCCCCACCAATCTTCCCCTGCGCCCCCCTCCCTCGATCTCAATCTCAACGCCGCGCAGATCCCCTGCGATGCACCCCGCGCTAATTCCCCTGCACCCTACCAGCTCCCTCCCGGCGAGCCGCCCCCCTCCGCCGCCGAGGAACCGCCAAAAATTCCCGACGCTGAGCCTCCGCCGGATGCGAAACCCGACGCCGGCGGCGGCGAGGGCGTTGATCCGATGGACAGGGAGGTGAAATTCGACATCgaggtggaggaggaggaggaggaggacgGCGGCGAGGGGCCGGTTATTCCGGGGCTGTCCGGCGCGCCGCCGCCGGAGGAAGGCGGCGAGGGCGATGATTGGGACAGCGACAGCGAGGATGATTTGAAGATAGTGTTGAATGAGAACAACCACATGGCCATGGAAAGAGGAGGGATGGTGGATGGtgatgaggaggaggaggatgagGATGAGGGGCTTGTGATCGTGGCTGGTGGTGATCCGAGTCAAGGGGTGGAGGAGCAGGAGTGGGGCGAGAATGCTGCCCTGGCCGGCGGCGACGGCGAGAGGAAAGACGGCGTCGAATTAGCCAAGGTCGGCGGCCCCGTGGTGCCGAAGGTTGGGTATAGCAATCATGGATATCACCCCTTTCATTCCCAGTTTAAGTATCAGTATGTTAGGCCTGGTGCGGCGCTAATGCCTGGAGCTACTACTTCTGCTCCAGGAGGGCCTCCTGGTCAGGTTCGTCCACTCGCTAACATGGCTGGTCGAGGCAGAGGGGACTGGAGACCACCTGGAATAAAAGGGGCTGCTGCTATGCAAAAAGGTTTTCATGCAGGTCCTGGATTACCTGGTTGGGGCAACAGTGCTGCAGGGCGGGGTTTTGGTGGTGGATTGGAATTCACTCTTCCTTCTcacaaGACTATATTTGATGTTGATATTGAGAGTTTTGAGGAGAAACCATGGAAATATCCGAATGTTGATACATCGGATTTTTTCAACTTTGGTTTGAATGAGGAGAGCTGGAAAGATTATAGCAAACAGCtggaGCAACTACGCTTGGAGTCTACAATGCAAAGCAAGATCCGTGTTTATGAGAGTGGTCGAACGGAGCAGGAGTATGATCCAGACTTACCCCCTGAATTAGCTGCAGCTACTGGTATACATGATGTTCCTGTTGAAAATGCAAATTCTCTAAAGTCAGATGTCAGACAAAGTGATGTTTTTAAAGGTTCTGGGACTGGACGTGTGCGACCACCACTACCAACTGGTAGAGCAATACAGGTAGAAGGTGGTTATGGTGACCGGCTTCCTTCCATTGATACCCGTCCTCCTCGAATCCGTGATTCGGATGCAATCATTGAGATTGTTTTACAGGATACAGAAGATGACCATTCCTCTGCAGGAATTGCTCAAGATCCACCAGAGGGTGGAGAATCCCATAGAGAGGATTTTAGAGAAGATCATGTAGCTGGAGATGAAATTCCGAGGTTGGAGCCTGAGTATTTTGATGGTTTTCCACAGGATTATAATGGTCGAAAGAAAGAGCTTGCAGGAAGAAGAATGCCGTTTATAAATTCCGGTCCTGCTAACATGCCTAATGGAGATGAAAAATTGTTCTTCCCACAGGAAGAGCCAATCGAGTACTCTGGTTCAAGGGGCCAAAATCCGAGGTCCTATGGTGGCAATCTCAGCTCCTCTCATGGGGAAAGGCAGATGCAAAGAAGAGTGTCTGATCAGTCTCCTCCTATTACTCCTATTCAAGAATTGGCAACTGATAACAATCAAAAAGAAGAGTCAGTCGAAAGCATGGAAGGTAGACATGGTACACATTTATCATCCCATGTCATTAAGGATGTAAGGGAGTCCAGTGTGGAGGACAAAGATACTGAGCTTGAGGACACTGCGACAGCTGATGGAAGTTCCAAAATGGAAAAGGAGGAAACAGTAGACAAAGTAGATACCCTTGAGGATGGGGTAGCAAAGAGACAGAAGTTAACATCTCAAGTTGAGCAGCCTTTGCTTGATGAAGTTGATGATTGGGAGGACTCAAAAGCTGCAAAAAGTAGTGATAACAGCAAAGCAAGATCAGTAAGCAGCAGGGATAACCAGAAGCGGCGGGAGGGTTTTGAGGAAGAAGTAGTTCAGGATCCACGATCAGCACATCTGAGTAGCATAAGACAGCACCCTGATGAAATTGAGCAGGGTTTTTATAGAAAAGAGCATGATGCAAAGCAAGAGCCTGAAAGAAATCGCATGATACTTAAAGGCAGAGAGAGACCATACCCTTACAAGGACCGGCATCCTAGCTCGGCTCCTCAGTTGCACACAAGTACTGATGGATTTGATGGGCAAAAAGAAAGGGACAATTCTGACATGGATTGGGCACGAAGAGATGATGATCTCTATAGCAGGAGGGTTAGAAATGATGAACCTAGAAAGAGGGATAGGGCTAAGGTtcgagaaaatgagagaaacgaCAAAGAAGATAGCCTTCATTCTAGAAAACAGTTGGATAATGGTAGCTACAGGGTTTCATATGATAAGGATGTTGGATCTAGAGACTCGAGACATAGGGAAAGAGATGAGGGTTTGAGGATTAGGTACGAAGCAGCGGAGGATTACCATGGAAAGAGGAGGAAGGATGAGGAATATCTTAGGAGGGAGCATATTGACAAAGAAGAAATTCTGCATGGCTACAGGGAAAATGCTAGTAGGCGCAGGCGAGAAAGAGATGAAGTATTGGATCCACGAAAGAGGGATGACCTGCAAAGAACTAGAGATAACCCTGATGATCAATATGCTGCCAGGCAGAAAGATGAGGCCTGGGTACTGAGGGAGAGGGGTGATAAGCAGAGAGATAGGGAGGAGTGGCATCGGATGAAACAGTCCCATGAAGAACACCTACCCAAGCGTGAAAGAGAAGAAGGACGGAGTTCTATAAGAAGTGGACGAGGAGCTGAAGAAAAAGCATGGGTTGGCCATGTTAAGGCTAAAGATGAACATAAACTTTCTGAGAAAGAATACCAATCCAGAGAAGCAATGCGGCGCAATGACCAATTGAAGAGGAGGGATCGAATTCAGGATGAAAGTCCACATCATAAGGGGCGTGATGATGCTTCTGCCCGTGGAAATCAATATACTACTGAGGAAAGGCGATCTAGGCAGGAAAGGTCAAGTAGTCGTAGTGATCGTGTTTCTAATGCTTCAGATAACCAAAAGGTTAAGCATAGAGAAGGCTCGAGGAAAAGCAAAGAACATGATGTTAGTGACCTTAATAGTTTAGGCCTGCCCAAGAGAAGTCAAGAAAATCAAAGTGGTCCAACCAATGGGAAGAAGGGCTTGAAAGGATCTGGTGATGAAGAACGTGCTGAGCATGAAATTCCAGGGCATCGCCTGTCCAGAAAACAGCGGGAAGATGTTTCCTCAGATGATGAACAGCAAGATTCTCACAGAGGACGTTCTAAATTGGAACGCTGGACGAGCCATAAGGAAAGAGATTTCAGTATCAACAAGTCCTCTTCTTCCATGAAGTTTAAAGACATTGATAAGGATAAAAACGATGGGGCTTCTGAAGCTGGGAAACCTGCGGATGAACCTGCTAAAACTGTTGATGTTGATAACCAACATCTCTTGTCGGCTGAAGCAAGGGATTCTGCAGATATGGAGAATAGGGATGCTGATACAAAAGAATTGGGTGATCGGCACCTTGACACAGTTGAGAGGTTGAAGAAGCGTAGCGAGCGGTTCAAGCTCCCAATGCCAAGTGAAAAGGAGGCCATTGTCATCAAGAAGTTAGAAAGTGAACCTCTGCCTTCTGCCAAAAGTGAAAATCCAGTAGATTCAGAAGTCAAACAAGAGCGACCTGCCCGGAAAAGAAGATGGATCACTAACTGA 3960 0.4737 MEDDDEFGDLYTDVLLPFASPSSSAPQPHQSSPAPPSLDLNLNAAQIPCDAPRANSPAPYQLPPGEPPPSAAEEPPKIPDAEPPPDAKPDAGGGEGVDPMDREVKFDIEVEEEEEEDGGEGPVIPGLSGAPPPEEGGEGDDWDSDSEDDLKIVLNENNHMAMERGGMVDGDEEEEDEDEGLVIVAGGDPSQGVEEQEWGENAALAGGDGERKDGVELAKVGGPVVPKVGYSNHGYHPFHSQFKYQYVRPGAALMPGATTSAPGGPPGQVRPLANMAGRGRGDWRPPGIKGAAAMQKGFHAGPGLPGWGNSAAGRGFGGGLEFTLPSHKTIFDVDIESFEEKPWKYPNVDTSDFFNFGLNEESWKDYSKQLEQLRLESTMQSKIRVYESGRTEQEYDPDLPPELAAATGIHDVPVENANSLKSDVRQSDVFKGSGTGRVRPPLPTGRAIQVEGGYGDRLPSIDTRPPRIRDSDAIIEIVLQDTEDDHSSAGIAQDPPEGGESHREDFREDHVAGDEIPRLEPEYFDGFPQDYNGRKKELAGRRMPFINSGPANMPNGDEKLFFPQEEPIEYSGSRGQNPRSYGGNLSSSHGERQMQRRVSDQSPPITPIQELATDNNQKEESVESMEGRHGTHLSSHVIKDVRESSVEDKDTELEDTATADGSSKMEKEETVDKVDTLEDGVAKRQKLTSQVEQPLLDEVDDWEDSKAAKSSDNSKARSVSSRDNQKRREGFEEEVVQDPRSAHLSSIRQHPDEIEQGFYRKEHDAKQEPERNRMILKGRERPYPYKDRHPSSAPQLHTSTDGFDGQKERDNSDMDWARRDDDLYSRRVRNDEPRKRDRAKVRENERNDKEDSLHSRKQLDNGSYRVSYDKDVGSRDSRHRERDEGLRIRYEAAEDYHGKRRKDEEYLRREHIDKEEILHGYRENASRRRRERDEVLDPRKRDDLQRTRDNPDDQYAARQKDEAWVLRERGDKQRDREEWHRMKQSHEEHLPKREREEGRSSIRSGRGAEEKAWVGHVKAKDEHKLSEKEYQSREAMRRNDQLKRRDRIQDESPHHKGRDDASARGNQYTTEERRSRQERSSSRSDRVSNASDNQKVKHREGSRKSKEHDVSDLNSLGLPKRSQENQSGPTNGKKGLKGSGDEERAEHEIPGHRLSRKQREDVSSDDEQQDSHRGRSKLERWTSHKERDFSINKSSSSMKFKDIDKDKNDGASEAGKPADEPAKTVDVDNQHLLSAEARDSADMENRDADTKELGDRHLDTVERLKKRSERFKLPMPSEKEAIVIKKLESEPLPSAKSENPVDSEVKQERPARKRRWITN 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1828 1319 Coils Coil 608 628 - -
Ssu1g1828 1319 MobiDBLite consensus disorder prediction 570 615 - -
Ssu1g1828 1319 MobiDBLite consensus disorder prediction 616 682 - -
Ssu1g1828 1319 MobiDBLite consensus disorder prediction 1116 1133 - -
Ssu1g1828 1319 MobiDBLite consensus disorder prediction 1136 1255 - -
Ssu1g1828 1319 MobiDBLite consensus disorder prediction 1 146 - -
Ssu1g1828 1319 MobiDBLite consensus disorder prediction 1284 1319 - -
Ssu1g1828 1319 Coils Coil 1025 1045 - -
Ssu1g1828 1319 Pfam Fip1 motif 332 374 IPR007854 -
Ssu1g1828 1319 MobiDBLite consensus disorder prediction 428 466 - -
Ssu1g1828 1319 PANTHER FIP1[V]-LIKE PROTEIN 1 1319 - -
Ssu1g1828 1319 MobiDBLite consensus disorder prediction 719 787 - -
Ssu1g1828 1319 MobiDBLite consensus disorder prediction 57 78 - -
Ssu1g1828 1319 MobiDBLite consensus disorder prediction 802 858 - -
Ssu1g1828 1319 MobiDBLite consensus disorder prediction 1301 1319 - -
Ssu1g1828 1319 MobiDBLite consensus disorder prediction 869 1114 - -
Ssu1g1828 1319 PANTHER FIP1[III]-LIKE PROTEIN 1 1319 IPR044976 GO:0006397
Ssu1g1828 1319 MobiDBLite consensus disorder prediction 482 505 - -
Ssu1g1828 1319 MobiDBLite consensus disorder prediction 547 1255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1828 Ssu-Chr1 45800319 45810086 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1828 - - gmx:100799266 2092.39