Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2444 ATGGGGAGTGATGACAGTCTGAAGGCATGGGTATCAGATAAGTTGATGTCACTGCTTGGATATTCTCAGCCCACAGTTGTACAGTACATGATTGGATTATCCAAGCAGGCTGCTTCACCAGCAGATTTGGCGGGTAAACTAGTGGAGTTTGGGATCTCATCGTCAGATACTCATGCATTTGCTGATGAAATATTCTCTCGAGTTCCTCGTAAATCTTCTGGTTTAAATCAATATCAGAAACAAGAGAGAGAAGCTGCAATGTTAGTAAGGAAGCAGAGGACTTATGACATTTTGAAGGCTGATGATGATGATGATGATTATGTTGGTGGTGAAGATAAATCTTCCAAAGCTACTACTTCAACGTCTAAAAAGATTGATAGCCGTAACAAACGTTTCAGGAAGAAAACTGAATATCAAGATGATGAAGATGATGAGGTAATTTCAAGAAAGGAAATGGAGAGACAAGTTAAGAGACGAACTTCTCCCGGTGAAGATACTGGATCAGAGTCAGAAGAAGAAAGATTAAAAGATCAAAGAGAGAAGGAGGAACTAGAGCAACATCTGAAAGAAAGAGATGCAGCAGGGACCCGGAAGTTGACTGAACAAAAATTGACAAGAAGGGAAGAAGAAGAGGCAATTCGAAGATCTACTGCACAAGAGCAGGATGATATTCAAGCTTTGAGAAAGGTTTCAAGGCAAGAATACTTGAAGAAAAGGGAGGAGAAGAAGTTAGAAGAACTGAGAGATGATATAGAAGATGAACAATATTTGTTTGAGGGCGTGAAGCTTACCGAAGCAGAATATCGTGAGCTTAGATACAAGAAAGAAATATATGAACTTGTAAAGAAACGGTCAGAGGAGGCTGACAATGTCAATGAGTATAGGATGCCAGAAGCTTATGATCAGGAAGGTGGTGTTAATCAGGAGAAGAGATTTTCTGTGGCTATGCAACGTTACAGGGATACAAATGCTGAGGAGAAAATGAACCCATTTGCTGAACAAGAGGCATGGGAGGAACACCAAATCGGAAAGGCAACGCTAAAGTATGGTTCAAAAAATAAAAAACAAGCCGCCGATGACTATCAGTTTGTTTTCGAGGACCAGATTGATTTTATCAAGGCATCAGTGATGGATGGAGATAATTTTGATTATGAAGAAATGGAAGATTCACTTGAAAAGTCCAGAGCAAAGTCAGCTTTAGAGGCACTTCAGGAGGAGAGGAAAAAGTTGCCCATTTATCCTTATCGGGACGAATTGCTCCAAGCCGTGCGTGATCATCAGGTGCTTGTAATTGTTGGAGAAACTGGTTCTGGAAAGACCACACAGATTCCCCAATATCTTCATGAGGCTGGCTACACAAAGCAAGGAATGATTGCATGTACCCAACCACGGCGTGTTGCAGCTATGAGTGTTGCTGCTCGTGTTTCTCAAGAAATGGGTGTTAAGCTAGGACATGAGGTTGGTTACTCTATCCGGTTCGAGGACTGTACATCGGAGAAGACTATTCTGAAATATATGACTGATGGAATGTTGTTGAGGGAATTCCTTGGTGAACCTGATCTGGCAAGTTACAGTGTTGTCATGGTGGATGAGGCTCATGAAAGGACACTCTCAACTGATATTTTGTTTGGATTAGTAAAGGATATTTCTCGTTTCCGGCCTGATCTTAAGTTGCTGATATCTAGTGCTACACTAGATGCAGAGAAGTTCAGTGACTACTTTGATTCTGCTCCAATATTTAAAATTCCAGGGAGACGGTATCCTGTTGAAATAAACTTTACAAAAGCACCAGAAGCTGACTATTTAGATGCAGCTATTGTCACATCACTTCAAATCCATGTCACTCAACCTCCTGGTGATATCTTGGTGTTCCTTACTGGTCAAGAAGAAATTGAAACTGCTGAAGAAATCTTAAAGCATCGAACTAGAGGCTTGGGCACAAAAATTGCCGAGTTAATAATATGCCCTATATATGCCAACCTACCAACTGAGCTACAGGCTAAAATATTTGAACCCACACCTGAAGGGGCAAGAAAGGTTGTCCTTGCAACTAATATTGCTGAAACATCGTTGACAATTGATGGGATCAAGTATGTCATTGATCCAGGATTCTGTAAGATGAAAAGTTATAATCCAAGAACAGGAATGGAGTCCTTATTGGTAACACCCATCTCAAAAGCTTCAGCAATGCAAAGAGCTGGGCGTTCTGGAAGAACAGGACCTGGGATGTGCTTCCGATTGTATACTGCATATAACTTTCACAATGATCTAGATGATAACACTGTTCCAGAAATACAACGGACTAACCTGGCAAATGTAGTGTTGACTTTGAAAAGTCTTGGTATTCATGACTTGCTTCACTTTGACTTTATGGATCCTCCACCTGCAGAGGCATTATTGAAAGCCCTAGAGCTTCTGTTTGCATTAAGTGCACTAAATAAACTGGGTGAGTTAACAAAGGTTGGAAGACGGATGGCAGAGTTCCCAGTTGATCCTATGTTGTCAAAAATGATTGTAGCTTCAGAAAAGTACAAGTGTTCAGATGAGATCATTTCTATTGCTGCTATGCTTTCTGTTGGGAACTCGATTTTTTATCGTCCAAAGGATAAACAAGTCCATGCAGACAATGCAAGGATGAACTTTCACACTGGAAATGTTGGAGACCATATTGCATTGCTAAAGGTCTACAACTCATGGAAGGAGACCAACTATTCAACACAATGGTGCTATGAAAATTATATACAGGTAAGGAGTATGAAACGGGCTAGGGATGTCCGTGATCAACTCGCAGGTCTTCTAGAGCGGGTTGAGATTGAACTAACGTCAAATTCTAGCGATTTGGATGCCATCAAGAAATCCATAACATCTGGATTTTTCCCACATTCTGCACGACTGCAAAAGAATGGATCATATCGAACTGTTAAACATCCACAGACTGTTAACATACATCCTAGTTCGGGGCTGGCACAGGTTCTTCCAAGATGGGTTGTATATCATGAACTAGTGCTTACAACCAAAGAATATATGAGACAGGTCACTGAATTAAAGCCAGAGTGGTTGGTGGAGATAGCTCCTCACTATTACCAGCTCAAGGATGTTGAAGACGCTGGTTCCAAGAAAATGCCCCGTGGAGAAGGACGTGCACAATAG 3150 0.4114 MGSDDSLKAWVSDKLMSLLGYSQPTVVQYMIGLSKQAASPADLAGKLVEFGISSSDTHAFADEIFSRVPRKSSGLNQYQKQEREAAMLVRKQRTYDILKADDDDDDYVGGEDKSSKATTSTSKKIDSRNKRFRKKTEYQDDEDDEVISRKEMERQVKRRTSPGEDTGSESEEERLKDQREKEELEQHLKERDAAGTRKLTEQKLTRREEEEAIRRSTAQEQDDIQALRKVSRQEYLKKREEKKLEELRDDIEDEQYLFEGVKLTEAEYRELRYKKEIYELVKKRSEEADNVNEYRMPEAYDQEGGVNQEKRFSVAMQRYRDTNAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQAADDYQFVFEDQIDFIKASVMDGDNFDYEEMEDSLEKSRAKSALEALQEERKKLPIYPYRDELLQAVRDHQVLVIVGETGSGKTTQIPQYLHEAGYTKQGMIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTSLQIHVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASAMQRAGRSGRTGPGMCFRLYTAYNFHNDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLHFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPVDPMLSKMIVASEKYKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDVRDQLAGLLERVEIELTSNSSDLDAIKKSITSGFFPHSARLQKNGSYRTVKHPQTVNIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLKDVEDAGSKKMPRGEGRAQ* 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2444 1049 PANTHER OS05G0389800 PROTEIN 108 1047 - -
Ahy20g2444 1049 PANTHER ATP-DEPENDENT RNA HELICASE 108 1047 - -
Ahy20g2444 1049 Pfam Helicase associated domain (HA2) 802 876 IPR007502 GO:0004386
Ahy20g2444 1049 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 606 781 IPR001650 -
Ahy20g2444 1049 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 525 534 IPR002464 -
Ahy20g2444 1049 Coils Coil 919 939 - -
Ahy20g2444 1049 Gene3D - 785 944 - -
Ahy20g2444 1049 Coils Coil 230 257 - -
Ahy20g2444 1049 Pfam Helicase conserved C-terminal domain 613 740 IPR001650 -
Ahy20g2444 1049 SMART helicmild6 632 740 IPR001650 -
Ahy20g2444 1049 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 420 583 IPR014001 -
Ahy20g2444 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 405 934 IPR027417 -
Ahy20g2444 1049 MobiDBLite consensus disorder prediction 109 223 - -
Ahy20g2444 1049 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 950 1027 IPR011709 -
Ahy20g2444 1049 Gene3D - 370 585 IPR027417 -
Ahy20g2444 1049 SMART ultradead3 408 592 IPR014001 -
Ahy20g2444 1049 CDD SF2_C_RHA 587 748 - -
Ahy20g2444 1049 Gene3D - 586 761 IPR027417 -
Ahy20g2444 1049 MobiDBLite consensus disorder prediction 101 223 - -
Ahy20g2444 1049 SMART ha2_5 801 893 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2444 Ahy-Chr20 130278977 130293857 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2444 K12813 - gmx:100809559 1852.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2444 20 130278977 130293857 Ahy20g2444 20 130278977 130293857 ECH
Ahy20g2444 20 130278977 130293857 Ahy10g1963 10 105814634 105829683 hybridization