Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00478 ATGGGTTGTTTTGCAAGCAAAAACGCAGACACCAAAGCCAATAGAATCGCACGGTGGCGATCCACGGGCATTGTTGCTCTACGCGATTCCAAATTGAAGACATTTCCAGATGAAATTCTTGATCTAGACAGATCTATACGCACTCTTGACTTAACACACAATCGAATAGTTGATATTCCCGTGGAAATTAGCAAATTAATAAACGTGCAGCGCCTGGTATTAGCGGACAACCTCATTGATAGACTGCCAGTGAATTTGGGGAAACTCCAATCTCTAAAACTCGTGAACCTTGATGGAAATCAAATTACTTCCTTGCCTGATGAATTGGGCCAGTTAGTAAGGCTTGAACGCTTATCCATCTCAGGGAATTTGTTAACATCCTTGCCAGCAACCATTGGCAGTTTGAGAAATCTGTTGATTTTAAACGTGTCAAATAACAAGTTGCAGTCTCTTCCAGAATCTGTTGGGAGTTGCTTCTCTTTGGAAGAAATACAAGCTAATGATAATCTTATTGAAGATCTTCCCTCTTCCGTGTGCAATCTCTCTAACTTGAAGTCACTTTGCTTAGATAACAATATTGTGAAGCAGATACCTCTGAATCTATTGAAAGACTGCAAAGCTCTTCAGAACATATCGCTGCATGGTAATCCTATATCAATGGATCAATTTCAACAGATGGATGGATTTCAAGAGTTTGAAGCGAGGAGGAGAAAGAAGTTTGACAAACAAATTGATTCAAATGTGATGATCAGTTCCAAAGGTCTTGATGAGGGTGTTGATCTATGA 786 0.3982 MGCFASKNADTKANRIARWRSTGIVALRDSKLKTFPDEILDLDRSIRTLDLTHNRIVDIPVEISKLINVQRLVLADNLIDRLPVNLGKLQSLKLVNLDGNQITSLPDELGQLVRLERLSISGNLLTSLPATIGSLRNLLILNVSNNKLQSLPESVGSCFSLEEIQANDNLIEDLPSSVCNLSNLKSLCLDNNIVKQIPLNLLKDCKALQNISLHGNPISMDQFQQMDGFQEFEARRRKKFDKQIDSNVMISSKGLDEGVDL* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00478 261 Gene3D Ribonuclease Inhibitor 5 240 IPR032675 -
Rops10g00478 261 ProSiteProfiles Leucine-rich repeat profile. 45 66 IPR001611 GO:0005515
Rops10g00478 261 PANTHER - 26 220 - -
Rops10g00478 261 ProSiteProfiles Leucine-rich repeat profile. 137 158 IPR001611 GO:0005515
Rops10g00478 261 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Rops10g00478 261 SUPERFAMILY L domain-like 19 221 - -
Rops10g00478 261 Pfam Leucine rich repeat 45 102 IPR001611 GO:0005515
Rops10g00478 261 SMART LRR_bac_2 160 177 - -
Rops10g00478 261 SMART LRR_bac_2 112 131 - -
Rops10g00478 261 SMART LRR_bac_2 89 108 - -
Rops10g00478 261 SMART LRR_bac_2 135 154 - -
Rops10g00478 261 SMART LRR_typ_2 112 134 IPR003591 -
Rops10g00478 261 SMART LRR_typ_2 181 204 IPR003591 -
Rops10g00478 261 SMART LRR_typ_2 89 111 IPR003591 -
Rops10g00478 261 SMART LRR_typ_2 135 158 IPR003591 -
Rops10g00478 261 SMART LRR_typ_2 66 88 IPR003591 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00478 49 216 Receptor kinase-like Gene Family AT5G46330 37.853 2.15e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00478 - - gmx:100807758 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00478 10 12792760 12797719 Rops10g00478 10 12792760 12797719 ECH