Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01430 ATGGCAGAAGAAAAAGAGATGAAAGTTGTTGAAGGTTTAGATCTTGAAAGGTATATGGGAAGATGGTACGAGATAGCTTCTTTTCCATCAAGGGATCAGCCAAAGGACGGAGGCAACACAAGAGCAACATACAAACTCAACACTGATGGAACTGTTGATGTTCTTAATGAGACTTGGAGTGGTGGCAAAAGAGGTTTTATTCAAGGTTCTGCTTTTAAGGCTAACCCTAATAATGATGAAGCTAAATTCAAAGTCAAGTTTTACCTTCCTCCATTCCTTCCAATTATTCCTGTTACAGGGAATTATTGGGTTTTGGCTATTGCTCATGATTATCATTATGCTTTGATTGGTGAACCAACCAAGAAATCTCTTTGGATATTATGTAGGGAGACTCGTTTAGATGATGAAATCTATAATGAACTTGTGGAGAAGGCAAAGGAAGAGGGATATGATGTCACCAAACTCCGCAAAACACCTCATGCAGATACACCGCCGGAGGAAGAAGGCCCCCAAGACAACAAAGGCATTTGGTGGTTTAAATCCATTTTTGGGAAATAG 558 0.3978 MAEEKEMKVVEGLDLERYMGRWYEIASFPSRDQPKDGGNTRATYKLNTDGTVDVLNETWSGGKRGFIQGSAFKANPNNDEAKFKVKFYLPPFLPIIPVTGNYWVLAIAHDYHYALIGEPTKKSLWILCRETRLDDEIYNELVEKAKEEGYDVTKLRKTPHADTPPEEEGPQDNKGIWWFKSIFGK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01430 185 FunFam Temperature-induced lipocalin 2 164 - -
Vivi4g01430 185 MobiDBLite consensus disorder prediction 154 173 - -
Vivi4g01430 185 ProSitePatterns Lipocalin signature. 12 25 IPR022272 -
Vivi4g01430 185 PIRSF Lipocalin_ApoD 1 171 IPR022271 -
Vivi4g01430 185 MobiDBLite consensus disorder prediction 154 169 - -
Vivi4g01430 185 SUPERFAMILY Lipocalins 6 162 IPR012674 -
Vivi4g01430 185 PRINTS Bacterial lipocalin signature 149 159 IPR002446 -
Vivi4g01430 185 PRINTS Bacterial lipocalin signature 50 59 IPR002446 -
Vivi4g01430 185 PRINTS Bacterial lipocalin signature 122 133 IPR002446 -
Vivi4g01430 185 PRINTS Bacterial lipocalin signature 13 27 IPR002446 -
Vivi4g01430 185 Pfam Lipocalin-like domain 13 159 IPR000566 -
Vivi4g01430 185 CDD lipocalin_Blc-like 10 158 IPR047202 -
Vivi4g01430 185 Gene3D - 1 166 IPR012674 -
Vivi4g01430 185 PANTHER APOLIPOPROTEIN D 5 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01430 Vivi-Chr4 52814215 52815159 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01430 K03098 - csin:114287251 308.145