Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1134 ATGGCGAAGAAAGAGATGGAAGCTGTGAGAGGTTTGGACTTGAAAAGGTACATGGGTCGATGGTACGAGATTGCTTCATTCCCTTCGTTTTTTCAGCCAAAGAATGGTGTGAACACCAGAGCCACATATACCCTTAACAACGATGGTACTGTGAATGTGCTGAACGAGACTTGGTCTAATGGAAAGAGAGACTCCATAGAAGGTACTGCTTACAAGGCAGACCCAAAATCTGATGAAGCAAAGTTAAAGGTAAAATTTTATGTTCCACCTTTCTTGCCGATCATCCCTGTCGTTGGGAACTACTGGGTCCTCTACATTGATGACGATTATCAGTATGCTTTGATCGGCGAACCGACCAGGAAATATCTTTGGATTTTATGCAGGCAAACCCATTTGGATGAAGAGAGCTACAATTTTCTTGTTGAGAAAGCGAAGGAGGAAGGATATGATGTGAGCAAACTCCAGAAGACTCCACAGAGTGATCCGCCACCAGAGGCGGAAGAAGGATCCCAAGACACCAAAGGCATTTGGTGGTTCAAATCCCTTTTTGGCAAATAG 558 0.4427 MAKKEMEAVRGLDLKRYMGRWYEIASFPSFFQPKNGVNTRATYTLNNDGTVNVLNETWSNGKRDSIEGTAYKADPKSDEAKLKVKFYVPPFLPIIPVVGNYWVLYIDDDYQYALIGEPTRKYLWILCRQTHLDEESYNFLVEKAKEEGYDVSKLQKTPQSDPPPEAEEGSQDTKGIWWFKSLFGK* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1134 185 ProSitePatterns Lipocalin signature. 11 24 IPR022272 -
Vra3g1134 185 Gene3D - 1 163 IPR012674 -
Vra3g1134 185 Pfam Lipocalin-like domain 12 159 IPR000566 -
Vra3g1134 185 PIRSF Lipocalin_ApoD 1 171 IPR022271 -
Vra3g1134 185 CDD lipocalin_Blc-like 9 157 - -
Vra3g1134 185 PRINTS Bacterial lipocalin signature 12 26 IPR002446 -
Vra3g1134 185 PRINTS Bacterial lipocalin signature 49 58 IPR002446 -
Vra3g1134 185 PRINTS Bacterial lipocalin signature 121 132 IPR002446 -
Vra3g1134 185 PRINTS Bacterial lipocalin signature 148 158 IPR002446 -
Vra3g1134 185 PANTHER TEMPERATURE-INDUCED LIPOCALIN-1-LIKE 1 185 - -
Vra3g1134 185 MobiDBLite consensus disorder prediction 150 175 - -
Vra3g1134 185 PANTHER APOLIPOPROTEIN D 1 185 - -
Vra3g1134 185 SUPERFAMILY Lipocalins 5 166 IPR012674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1134 Vra-Chr3 11903574 11904996 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1134 K03098 - pvy:116131079 338.191