Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00954 ATGGCGAAGAAAGAGATGGAAGTTGTGAAGAATGTGGACTTGAAAAGGTACATGGGTCGATGGTACGAGATTGCTTCATTCCCTTCGCGTTTTCAGCCAAAGAATGGTGAGAACAGCAGAGCCACATATACCCTTAACGAAGATGGGACTGTGAATGTGCTCAACGAGACTTGGTCTGATGGAAAGAGAGGCTACATAGAGGGTACTGCTTACAAGGCAGACCCAAAATCTGACGAAGCAAAGTTGAAGGTAAAATTTTATGTTCCACCTTTCTTGCCCATCATCCCTGTCGTTGGGGACTACTGGGTCCTCTTCCTTGATGACGATTATCATTATGCTTTGATCGGCCAACCAAGCAGGAGATACCTTTGGGTAAACATTACTGAAGTTGAAGCTTTACCAAAATTCAGAATGTTACTACAAACTGATACTGATAAGTTGAAAATTTTATGCAGGCAAACCCATTTGGATGAGGAGATCTACAATCAACTTGTTCAGAAAGCTAAGGACGAAGGATATGATGTGAGCAAACTCCGCCAGACTCCACAGAGTGATCCACCACCAGAGGCAGAACAAGGATCCCAAGACAACAAAGGCATTTGGTGGATCAAATCCATTTTTGGCAAATAG 630 0.4333 MAKKEMEVVKNVDLKRYMGRWYEIASFPSRFQPKNGENSRATYTLNEDGTVNVLNETWSDGKRGYIEGTAYKADPKSDEAKLKVKFYVPPFLPIIPVVGDYWVLFLDDDYHYALIGQPSRRYLWVNITEVEALPKFRMLLQTDTDKLKILCRQTHLDEEIYNQLVQKAKDEGYDVSKLRQTPQSDPPPEAEQGSQDNKGIWWIKSIFGK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00954 209 ProSitePatterns Lipocalin signature. 11 24 IPR022272 -
Vimu10g00954 209 Gene3D - 1 187 IPR012674 -
Vimu10g00954 209 MobiDBLite consensus disorder prediction 177 199 - -
Vimu10g00954 209 CDD lipocalin_Blc-like 9 181 IPR047202 -
Vimu10g00954 209 SUPERFAMILY Lipocalins 5 187 IPR012674 -
Vimu10g00954 209 MobiDBLite consensus disorder prediction 177 191 - -
Vimu10g00954 209 PIRSF Lipocalin_ApoD 127 195 IPR022271 -
Vimu10g00954 209 PIRSF Lipocalin_ApoD 1 126 IPR022271 -
Vimu10g00954 209 Pfam Lipocalin-like domain 141 183 IPR000566 -
Vimu10g00954 209 Pfam Lipocalin-like domain 12 125 IPR000566 -
Vimu10g00954 209 PANTHER APOLIPOPROTEIN D 4 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00954 Vimu-Chr10 8549106 8550393 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00954 K03098 - mof:131157502 337.421