Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00563 ATGGGTTGTTTCGCAAGCAAAAGCTCTGAGACGAAGGCGAGTAGAGTCTCACGGTGGCGATCCACTGGCATTGTTGCTCTGCGTGATTCCAAATTGAAGACTTTTCCGGATGAAATTATTGATTTAGACAGATCTGTACGCACTCTTGATTTAACGCATAATCGAATAGCTGACATTCCTTTGGAAATTAGCAAATTGATTAATATGCAGCGCATGGTATTAACAGACAACATCATTGAGAGACTGCCCGTGAATTTGGGGAAACTTCAATCTCTTAAGCTCATGAACCTTGATGGAAATCGAATTACTTCCTTGCCTGATGAATTGGGCCAGTTAGTAAGGCTTGAACGCTTATCCATCTCAGGGAATTTGTTAACATCCTTGCCGTCAACTATTGGAAGTTTGAGAAACCTGTTGATTTTAAACGTCTCAAATAACAAGTTACAGTTCCTTCCAGAATCTGTTGGGAGTTGCTTCTCTTTGGAAGAATTACAAGCCGATGATAATCTTATTGAAGATCTTCCTTCTTCAGTGTGCAATCTCTCTCACTTGAAGTCACTTTGCTTAGACAACAATAATGTGAAGCAGATTCCTCAGAATCTATTGAAAGATTGCAAAGCTCTTCAGAACATATCACTGCATGGTAATCCTATATCAATGGACCAATTTCAACAGATGGACGGGTTTCAAGAGTTTGAAGCAAGAAGAAAAAAGAAATTTGACAAACAAATTGATTCAAATGTAATGATTGGCTCCAAAGGTCTTGATGAGGGTGTTGATCTATGA 786 0.3906 MGCFASKSSETKASRVSRWRSTGIVALRDSKLKTFPDEIIDLDRSVRTLDLTHNRIADIPLEISKLINMQRMVLTDNIIERLPVNLGKLQSLKLMNLDGNRITSLPDELGQLVRLERLSISGNLLTSLPSTIGSLRNLLILNVSNNKLQFLPESVGSCFSLEELQADDNLIEDLPSSVCNLSHLKSLCLDNNNVKQIPQNLLKDCKALQNISLHGNPISMDQFQQMDGFQEFEARRKKKFDKQIDSNVMIGSKGLDEGVDL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00563 261 SMART LRR_typ_2 181 204 IPR003591 -
Vifa2g00563 261 SMART LRR_typ_2 89 111 IPR003591 -
Vifa2g00563 261 SMART LRR_typ_2 112 134 IPR003591 -
Vifa2g00563 261 SMART LRR_typ_2 135 158 IPR003591 -
Vifa2g00563 261 SMART LRR_typ_2 44 66 IPR003591 -
Vifa2g00563 261 Gene3D Ribonuclease Inhibitor 8 249 IPR032675 -
Vifa2g00563 261 PANTHER - 26 220 - -
Vifa2g00563 261 SMART LRR_bac_2 160 177 - -
Vifa2g00563 261 SMART LRR_bac_2 135 154 - -
Vifa2g00563 261 SMART LRR_bac_2 181 200 - -
Vifa2g00563 261 SMART LRR_bac_2 89 108 - -
Vifa2g00563 261 SMART LRR_bac_2 112 131 - -
Vifa2g00563 261 ProSiteProfiles Leucine-rich repeat profile. 45 66 IPR001611 GO:0005515
Vifa2g00563 261 Pfam Leucine rich repeat 68 125 IPR001611 GO:0005515
Vifa2g00563 261 Pfam Leucine rich repeat 160 218 IPR001611 GO:0005515
Vifa2g00563 261 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Vifa2g00563 261 SUPERFAMILY L domain-like 20 221 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00563 34 227 Receptor kinase-like Gene Family AT3G47570 26.316 8.69e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00563 - - gmx:100807758 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00563 2 115618665 115622159 Vifa2g00563 2 115618665 115622159 ECH