Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00958 ATGGGTTGTTTCTTGAGCAAAAACGGCGATACCACAGCCAACAGGATCGCACGTTGGCGAGCCACTGGAATTGTTGCTTTGCGCGATTCCAAATTAAAGGCAATCAATTCTCTCTTTATCGTCTATTTGAGGCGTTTTTTTGGTATGAATGGATTTTTGGAAAAAGTGATGTTATACTGTTGTTTGATATTTGCTAGACTCGTAAAAACATTTGACAGAGTTGACATTCCTATGGAAATCAACAAGTTAATTAATATACAACGAATGGTATTAGCGGAGAACTTAATTGAGAGACTGCCAGTGAGTTTAGGCAAACTCCAATCTTTGAAACTGTTGAACCTGGATGGAAATCGAATTACTTCCTTACCTGATGAATTGGACCAGTTAGTAAGGCTTGAACGCTTATCTGTCTCAAGGAATTTATTAGCATCCTTGCCAATGACTATTGGAAGTTTGAGAAATTTGGTGCTTTTGAATGTGTCAAATAACAAGTTACGGTCCCTTCCGGAATCTGTTGGCAGTTGCTCCTCTTTGGAAGAGTTACAAGCAAATGATAATCTTATAGAAGATCTTCCATCTTCCGTGTGCAATCTCTCTCACTTAAAGTCACTTTGCTTGGATAACAATAATGTGAAGCAGACTCCTCAGAATTTATTGAAAGACTGTAAAGCTCTTCAGAACATATCACTGCATGGTAATCCTATATCAATGGATCAATTGCAACAGATGGAGGGGTTTCAAGAGTTTGAAGCAAGGAGGAAAAAGAAGTTTGACAAACAAATTGATTCAAATGTGATGATCGGTTCAAAAGGTCTTGATGAGGGTGTTGATTTATGA 837 0.3799 MGCFLSKNGDTTANRIARWRATGIVALRDSKLKAINSLFIVYLRRFFGMNGFLEKVMLYCCLIFARLVKTFDRVDIPMEINKLINIQRMVLAENLIERLPVSLGKLQSLKLLNLDGNRITSLPDELDQLVRLERLSVSRNLLASLPMTIGSLRNLVLLNVSNNKLRSLPESVGSCSSLEELQANDNLIEDLPSSVCNLSHLKSLCLDNNNVKQTPQNLLKDCKALQNISLHGNPISMDQLQQMEGFQEFEARRKKKFDKQIDSNVMIGSKGLDEGVDL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00958 278 ProSiteProfiles Leucine-rich repeat profile. 154 175 IPR001611 GO:0005515
Vimu10g00958 278 Gene3D Ribonuclease Inhibitor 25 266 IPR032675 -
Vimu10g00958 278 SMART LRR_bac_2 152 171 - -
Vimu10g00958 278 SMART LRR_bac_2 198 217 - -
Vimu10g00958 278 SMART LRR_bac_2 175 194 - -
Vimu10g00958 278 SMART LRR_bac_2 106 125 - -
Vimu10g00958 278 SMART LRR_bac_2 129 148 - -
Vimu10g00958 278 PANTHER - 76 237 - -
Vimu10g00958 278 SUPERFAMILY L domain-like 75 238 - -
Vimu10g00958 278 SMART LRR_typ_2 198 221 IPR003591 -
Vimu10g00958 278 SMART LRR_typ_2 152 175 IPR003591 -
Vimu10g00958 278 SMART LRR_typ_2 129 151 IPR003591 -
Vimu10g00958 278 SMART LRR_typ_2 106 128 IPR003591 -
Vimu10g00958 278 Pfam Leucine rich repeat 85 142 IPR001611 GO:0005515
Vimu10g00958 278 ProSiteProfiles Leucine-rich repeat profile. 108 129 IPR001611 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00958 76 250 Receptor kinase-like Gene Family AT3G47570 30.769 2.35e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00958 - - vra:106756807 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00958 10 8591398 8604200 Vimu10g00958 10 8591398 8604200 ECH