Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01743 ATGACATCAATGGCGGTAGCGAGCAACATAGGGCTACAATTTCAAGCAAATATGAGCAATGCAAAGAAGAAAGTTGTGGACAATAAACGGATATTATCATTGTCGGTGAGTGCAAGTTCTCATACCAAGGGAACGAAGCAGAGTCAGATCAATACAATACATAATGTTACAGCAGGCAAGTTGGCAAATGAAAGCGCAGCAACACACACAACCCTTGTTACCTTCTTGCGTGGAAGGTTTGTGGAGGACATGTTTGTGTATAGGCAAGTTTTCGTTATCAGGTCATATCAAATTGGACCAGATAAAGCTATCACCATGGAGACACTCATGAATTTTCTCCAGGAAACTGCTATAAATCATATGTCTAGCTGCGGGGTAACTGGGAATGATTTTGGAACTACTCGTGAGATGGACCATCGGAAACTCATATGGGTTGCTATTCGTATTCAGGACAGGGGAGATGAAATTGAGGTTGACACTTGGTTTGATGCTATCGGAAAAAATGGAAACCGGAGAGACTTTATAATTAGGGATTACAACACCAAAGAGATCATAGCAAAAGCAACAAGTACATGGGCTTTCATGAATAAAGAAACAAGAAAATTATCCAAGATGCCTGAAGAAGTTAGACAAGAGCTTGTTCCTTTCCACTTAAATAGGCTTGCCTTTGCCACTAAAGAAACAGATTGTAACAAGATGCACAAGCTCACTGACAACGCTGCTGAGAGAATCCGATCTGGGATAGCTCCAAGTTGGAATGACATGGATGCTAATCAGCATGTTAACAATGTGAAATACATTGGATGGATTTTAGAGAGTGTGCCAGCTGAAGTGTTAGAAAATTATAATGTGACAAGCATGACTTTGGAGTTTCGGCGTGAATGTACACAATCAAATTTGTTGGAATCCATGACCAGTCCAATAGCAATGGTGATCGGTGCCTCCAATAATAATTCCATTAACAGAAAACCAGATTTGCAATATACACACCTGCTTCGTCTGCAAGACAATAAAGCAGAGTTAGTTCGAGCTAGAACTGAATGGCATCTTAAGCCAAAGCACGAGTGA 1068 0.4064 MTSMAVASNIGLQFQANMSNAKKKVVDNKRILSLSVSASSHTKGTKQSQINTIHNVTAGKLANESAATHTTLVTFLRGRFVEDMFVYRQVFVIRSYQIGPDKAITMETLMNFLQETAINHMSSCGVTGNDFGTTREMDHRKLIWVAIRIQDRGDEIEVDTWFDAIGKNGNRRDFIIRDYNTKEIIAKATSTWAFMNKETRKLSKMPEEVRQELVPFHLNRLAFATKETDCNKMHKLTDNAAERIRSGIAPSWNDMDANQHVNNVKYIGWILESVPAEVLENYNVTSMTLEFRRECTQSNLLESMTSPIAMVIGASNNNSINRKPDLQYTHLLRLQDNKAELVRARTEWHLKPKHE. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01743 355 CDD 4HBT 85 196 - -
Seca4g01743 355 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 85 222 IPR029069 -
Seca4g01743 355 FunFam Acyl-[acyl-carrier-protein] hydrolase 78 354 - -
Seca4g01743 355 Pfam Acyl-ACP thioesterase 86 349 IPR002864 GO:0006633|GO:0016790
Seca4g01743 355 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 247 348 IPR029069 -
Seca4g01743 355 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 24 352 IPR045023 GO:0006633|GO:0016297
Seca4g01743 355 Gene3D Hotdog Thioesterase 78 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01743 Seca-Chr4 28248111 28255465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01743 75 351 Acyl Lipid Metabolism Gene Families AT1G08510 49.296 8.92e-94 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01743 K10781 - gmx:100791811 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01743 4 28248111 28255465 Seca4g01743 4 28248111 28255465 ECH