Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0646 ATGATGAATGGATTGAAAGATGTTCCATTGATTAATGGTACAGAAGATTTTGCTACTTTCCTTCGTGGAAGTTTTGTCGAAGGCAGGTTTGTATACAGACAAAATTTCTTTGTGAGGTCTTACGAAACTGGGCCAGATAAGACTATCTCCATGGAGACACTCACCAACTTTCTCCAGGAAAGTGCTTTAAATCATGTCAGCAGCTGTGGGTTCAGTCAGAACAGTTTTGGAACTTCTTACGAGATGGATCTTCGCAAACTCATTTGGGTCATTACTCGCATTCAGGTTCAAGTACAGAGATATAGCAGATGGGGGGATGAAATTGAGGTTGAAACTTGGATTGATGTTGGCGGAAAGAATGGGACACGAAGAGATTGGATAATCAGGGATCGTTACACCAAAGAAATCATAGCTAAAGCAACCAGCAAATGGGCAATCATGAATAGAGAAACAAGAAGATTATCCAAGATGCCTGAAGAAGTTAGACAAGAGCTTGTTCCTTTCTACTTTAACAAGTTTGCTATTGCCACTGAAGAAATAGATCAGCAGAAGATACAGAAGCTCACTGATGCCACCGCTGAGGGTTTTCGATTTGGAGTGACACCAGGGTGGAACGACATGGATGTTAACCAGCATGTTAACAACGCAAAATACACCAGATGGATCTCAGAGAGCGTGCCAAGAAAAATGTTAGAAGATTACAAAATGACAAGCATGATCTTAGAATTTCGGCGTGAATGTACGCATTCAGATATACTGGAATCAATGACAAGTGCATCATCCAAAGTGATTGCTGCCTCAAACAATAAGTATGTTAGCAGAAAACCCCACCTGCAATATATACACTTGCTTCGTCTCCAAGACAATAAGACGGAGGTCGTTCGTGCCAGAACCGAATGGAATCTGAAACAAAACCACACATGA 924 0.4123 MMNGLKDVPLINGTEDFATFLRGSFVEGRFVYRQNFFVRSYETGPDKTISMETLTNFLQESALNHVSSCGFSQNSFGTSYEMDLRKLIWVITRIQVQVQRYSRWGDEIEVETWIDVGGKNGTRRDWIIRDRYTKEIIAKATSKWAIMNRETRRLSKMPEEVRQELVPFYFNKFAIATEEIDQQKIQKLTDATAEGFRFGVTPGWNDMDVNQHVNNAKYTRWISESVPRKMLEDYKMTSMILEFRRECTHSDILESMTSASSKVIAASNNKYVSRKPHLQYIHLLRLQDNKTEVVRARTEWNLKQNHT* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0646 307 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 15 305 IPR045023 GO:0006633|GO:0016297
Vra5g0646 307 CDD 4HBT 32 148 - -
Vra5g0646 307 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 188 300 IPR029069 -
Vra5g0646 307 Gene3D Hotdog Thioesterase 23 306 - -
Vra5g0646 307 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 29 173 IPR029069 -
Vra5g0646 307 Pfam Acyl-ACP thioesterase 31 301 IPR002864 GO:0006633|GO:0016790
Vra5g0646 307 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 15 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0646 Vra-Chr5 10029762 10035895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0646 20 307 Acyl Lipid Metabolism Gene Families AT1G08510 47.917 1.38e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0646 K10781 - gmx:100795014 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0646 5 10029762 10035895 Vra5g0646 5 10029762 10035895 ECH