Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2402 ATGGTCCAGGATACTGCTCTAAATCATATCTCCAGCTGTGGGGTAAGTCAGAACGATTTTGGGGCTACTTACGAAATGGACCTTCGCAAACTCATTTGGGTTGTTAGTCGCATGCAGGTTCAAGTACAGAGATACAGCAAatgGGGGGATGAAATTGAGGTTGATACTTGGTTTGATACCGCGGGAAAGAATGGAATGCGAATAGATTGGATAATCAGGGATCATTATACCAAAGAGATCATAGCAAAAGCAACCAGCACATGGGCCACCTTGAATAGAGAAACAAGAAGATTATCCAAGATGCCTGAAGAAGTTAGACAAGAACTTGGTCCTTTCTACATTAATAGGCTTGCCATTGCCAGGGAAGAAATAGATCATCAGAAGATACACAAGCTCACTGACGCCACTGCTAAGAGTTTTCGATTTTGGGTGACtCCCGGGTGGAACGACATGGATGTTAACCAGCatgttaacaatgtaaaatacaTCAGATGGATCTTAGAgAGCGTGCCAAGAGAAgtattaaaagattataaaatgaCGAGCATGACTTTAGAGTTTCGGCGTGAATGTACGCAATCAGATTTGTTGGAATCAATGACCAGTCCATCCTCCAGCGTGATTGGTGCCTCTAATAATAACTCCGCTAACAGAAAACCCGACTTGCAATATATACACCTGCTTCGTCTACAAGACAATAAAGCGGAGTTGGTCCGAGCCAGAACCGAATGGCATCTTAAGCAAAGCCACAAGTGA 756 0.4167 MVQDTALNHISSCGVSQNDFGATYEMDLRKLIWVVSRMQVQVQRYSKWGDEIEVDTWFDTAGKNGMRIDWIIRDHYTKEIIAKATSTWATLNRETRRLSKMPEEVRQELGPFYINRLAIAREEIDHQKIHKLTDATAKSFRFWVTPGWNDMDVNQHVNNVKYIRWILESVPREVLKDYKMTSMTLEFRRECTQSDLLESMTSPSSSVIGASNNNSANRKPDLQYIHLLRLQDNKAELVRARTEWHLKQSHK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2402 251 Pfam Acyl-ACP thioesterase 2 245 IPR002864 GO:0006633|GO:0016790
Ssu1g2402 251 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 2 249 - -
Ssu1g2402 251 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 2 118 IPR029069 -
Ssu1g2402 251 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 138 244 IPR029069 -
Ssu1g2402 251 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 2 249 IPR045023 GO:0006633|GO:0016297
Ssu1g2402 251 CDD 4HBT 1 92 - -
Ssu1g2402 251 Gene3D Hotdog Thioesterase 1 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2402 Ssu-Chr1 67015536 67016969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2402 2 247 Acyl Lipid Metabolism Gene Families AT1G08510 50.813 2.91e-82 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2402 K10781 - gmx:100791811 450.284