Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00306 ATGACATCAATGGTGGCACCCATCATCATCGGGCTACAAATTCCAGGAAATTGGTGCAATGCGAAGAAGAAAATTGTAGACAAGGCAAATCCGAGGTTGAACTCCTCATGCAAGCCTAATGCATTGAACAATAAACGAAGATTTTCATTGTGGATTACTGCAAGTTCTGATTGTAGTCCTGGGGGAATGGAAAATGTGCCATTGATTCATCATGCACCAGACAAGCTTGCAAATGAAAGAACATTTCGAGGGAAGTTTGTGGAGGACACACTTGTTTATAGGCAGATTTTCCTTGTCGGGTCTTACCAAACTGGATCAGATAAAACTATCACCATGGAGGCACTCATGAATTTTCTTCAGGAAACTGCTATAAGGCAAGGCAGCAGCATTTGGGGAAGTCAGAACGATTTTGGAGAAACTCGGGAAATGAAGCTTCGCAAACTCATTTGGATTGTGACTCGTATTCAGGTTCAAGTACAGAGATATAGCAAACGGGGGGATGAAATTGAAGTTGATACTTGGTTTGATACTGCGGGAAAGAATTTAACGCGCATAAATTGGATAATAAGGGATCATTATACCAAAGAGATCATAGCAAAAGCAACCAGCACTTGGGCGTTCATGAATAGAGAAACAAGAAGATTGTCCAAGATACCTGATGAAGTTAGACAAGAACTTAATCCTTTCTGCTTTAATAGGCATGCCATTTCCTCTGAAGAAATAGATCATCAGAAGATACCAAAGGTTACTGATGCCAATGCTGAGACATTTCGCTATGGGATGGCTCCAACGTGGAATGACATCGATGCAAACCAGCATGTTAACAATTCTAAATACATCAGATGGATCTTAGAGAGCGTGACAAGAGAAGTATTAGAAAATTATAAATTGACAAGCATGACAATAGAGTTTCGGCGTGAATGTAGGCATTCAGATGTGTTGGAATCACTGACTTGTTCATCATCCACCGTCGTTGGTGACTCTAATAATAACAGAAAACCCGATCTGCAATATATACATCTGCTTCGTCTACAAGACAGTAAAGCGGAGTTGGTCCGAGCCAAAACAGAATGGCATCTTAAGCAAAAGAACCAGTGA 1098 0.4071 MTSMVAPIIIGLQIPGNWCNAKKKIVDKANPRLNSSCKPNALNNKRRFSLWITASSDCSPGGMENVPLIHHAPDKLANERTFRGKFVEDTLVYRQIFLVGSYQTGSDKTITMEALMNFLQETAIRQGSSIWGSQNDFGETREMKLRKLIWIVTRIQVQVQRYSKRGDEIEVDTWFDTAGKNLTRINWIIRDHYTKEIIAKATSTWAFMNRETRRLSKIPDEVRQELNPFCFNRHAISSEEIDHQKIPKVTDANAETFRYGMAPTWNDIDANQHVNNSKYIRWILESVTREVLENYKLTSMTIEFRRECRHSDVLESLTCSSSTVVGDSNNNRKPDLQYIHLLRLQDSKAELVRAKTEWHLKQKNQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00306 365 Pfam Acyl-ACP thioesterase 91 359 IPR002864 GO:0006633|GO:0016790
Cca03g00306 365 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 247 358 IPR029069 -
Cca03g00306 365 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 87 233 IPR029069 -
Cca03g00306 365 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 35 363 IPR045023 GO:0006633|GO:0016297
Cca03g00306 365 Gene3D Hotdog Thioesterase 83 364 - -
Cca03g00306 365 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 35 363 - -
Cca03g00306 365 CDD 4HBT 115 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00306 Cca-Chr3 4667025 4672902 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00306 84 361 Acyl Lipid Metabolism Gene Families AT1G08510 46.763 3.32e-83 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00306 K10781 - gmx:100791811 506.138