Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01450 ATGAATTTTGCTATGACATCATCAATGGTGGCACCCATCAATATGGGGAAACAACTTCTAGGAAATTGGTGCAGTGCCAAGAAGAGAATTGTAGAGATTAACAACACTAATAGAAGGTTTTCGTTGTTGGTGAGTGCATGTTCTCATTGTAGTCCAGTGGCAGTGAACACGATGAATGGATTGAAAGATGTTCCATTGATTAATGGTACAGCAAGGAAGTTGGGAAATGAAAGCACAGAAGATTTTGCTACTTTCCTTCGTGGAAGTTTTGTCGATGGCAGGTTTGTATATAGACAAAATTTCTTTGTGAGGTCTTACGAAACTGGGCCAGATAAGACTATCTCCATGGAGACACTCACCAACTTTCTCCAGGAAAGTGCTTTAAATCATATCAGCAGCTGCGGGTTCAGTCAGCACAGTTTTGGAACTTCTTACGAGATGGATCTTCGCAAACTCATTTGGGTCATTACTCGCATTCAGGTTGAAACTTGGATTGATGTTTGCGGAAAGAATGGGGCACGAAGAGATTGGATAATCAGGGATCGTTACACCAAAGAAATCATAGCTAAAGCAACCAGCAAATGGGCAATCATGAATAGAGAAACAAGAAGATTATCCAAGACGCCTGAAGAAGTTAGACAAGAACTTGTTCCTTTCTACTTTAACAAGTTTGCTATTGCCATTGAAGAAATAGATCAGCAAAAGATACAGAAGCTCACTGATGCCACTGCTGAGGGTTTTCGATTTGGAGTCACTCCAGGGTGGAACGACATGGATGTTAACCAGCATGTTAACAACGCAAAATACACCAGATGGATCTCAGAGAGCGTGCCAAGAAAAATGTTAGAAGATTACAAAATGACAAGCATGATCTTAGAATTTCGGCGTGAATGTACGCATTCAGATATACTGGAATCAATGACAAGTGCATCATCCAAAGTGATTGGTGCCTCAAACAATAAGTACGTTAGCAGAAAACCCCACCTGCAATATATACACTTGCTTCGTCTACAAGACAATAAGACGGAGGTGCTTCGTGCCAGAACCGAATGGAAACTGAAACAAAACCACACATGA 1077 0.4095 MNFAMTSSMVAPINMGKQLLGNWCSAKKRIVEINNTNRRFSLLVSACSHCSPVAVNTMNGLKDVPLINGTARKLGNESTEDFATFLRGSFVDGRFVYRQNFFVRSYETGPDKTISMETLTNFLQESALNHISSCGFSQHSFGTSYEMDLRKLIWVITRIQVETWIDVCGKNGARRDWIIRDRYTKEIIAKATSKWAIMNRETRRLSKTPEEVRQELVPFYFNKFAIAIEEIDQQKIQKLTDATAEGFRFGVTPGWNDMDVNQHVNNAKYTRWISESVPRKMLEDYKMTSMILEFRRECTHSDILESMTSASSKVIGASNNKYVSRKPHLQYIHLLRLQDNKTEVLRARTEWKLKQNHT 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01450 358 Pfam Acyl-ACP thioesterase 96 352 IPR002864 GO:0006633|GO:0016790
Vimu10g01450 358 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 239 351 IPR029069 -
Vimu10g01450 358 FunFam Acyl-[acyl-carrier-protein] hydrolase 88 357 - -
Vimu10g01450 358 Gene3D Hotdog Thioesterase 88 357 - -
Vimu10g01450 358 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 94 223 IPR029069 -
Vimu10g01450 358 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 78 355 IPR045023 GO:0006633|GO:0016297
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01450 Vimu-Chr10 15622839 15626140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01450 85 358 Acyl Lipid Metabolism Gene Families AT1G08510 45.139 7.70e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01450 K10781 - gmx:100795014 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01450 10 15622839 15626140 Vimu10g01450 10 15622839 15626140 ECH