Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04680 ATGGCTACAATCAACAAAATTGGTTTACAAGGGAAATGGAATCTTAGCAATGTAAAGAAGGAAAATATGATCATGATCGACAATGGGAAGGTTTTGGGGGTGAATTTTAATTATTCTCATTCTCATGATCACAACAATAACACAATATTGAAGAATAATAAAAGAAGATTTTCATTGGTGATTACAAGTTGTAATCATGGTAGTACTTATAATAAAGTGGATACAATTAATGGAACAAAGGTGAATGGTTTACAAGTGGTAGAAGCTCCAAAAAAATTGTCAAATGAAAATACAACAGATGTTGCTCTTGTTACAAATGGAAAATTTGTTGAAGGAAGGTTTGTGTTTAGACAAATTTTTGTTATTAGGTCTTATGAAATTGGTCCAGATAGAACTGCCACCATGGAGACACTCATGAATTTTCTTCAGGAAACTGCTCTAAATCATGTTACCAGCTCTGGGATAGGAGGAGACGGATTTGGAGCTACGCGCGAGATGAGCCTTAGGAAACTCATTTGGGTCGTTACTCGTATTCAAGTTCAAGTGCAAAGATATAGCAAATGGGGAGAAGAAATCGAAATTGATACTTGGGTGGACGCAGCGGGGAAAAATGGAATGCGAAGAGATTGGATAATCAGAGATCGTTGTACGAAAGAGATCATAACTAAAGCAACAAGTACATGGGTGATAATGAATAGAGAAACTAGAAGACTATCAAAGATACCTGAAGAAGTTAGAAGAGAGCTTTCTCCTTTTTACATTCATAAGATTGCTGTAGCTAGCGAAGAAAGAGATTGCGAAAAGATAGACAAACTTACCGATGACACTGCTGAGCGAACACGATCTGGTTTGGCTCCAAGGTGGAATGACATGGATGTTAACCAGCATGTGAACAATGTGAAATACATTGGATGGATTTTAGAGAGTGTGCCAATAAAAGTACTAGAAGATTATAACATGACAAGCATGACATTAGAGTTTAGGCGTGAATGTACACAATCAAATATGTTGGAATCCATGACATGTCCAACAGAAAGAGTGATAGGTGAATCTGATAATAATTCAGTCAATAGAAAACCTGATCTTCAATACACACACCTTCTTCGTCTACAAGACGATAAAAGAGACGTTGTTCGAGCTAGATCTGAATGGAATTTAAAGCAAACTCAACAATGA 1176 0.3648 MATINKIGLQGKWNLSNVKKENMIMIDNGKVLGVNFNYSHSHDHNNNTILKNNKRRFSLVITSCNHGSTYNKVDTINGTKVNGLQVVEAPKKLSNENTTDVALVTNGKFVEGRFVFRQIFVIRSYEIGPDRTATMETLMNFLQETALNHVTSSGIGGDGFGATREMSLRKLIWVVTRIQVQVQRYSKWGEEIEIDTWVDAAGKNGMRRDWIIRDRCTKEIITKATSTWVIMNRETRRLSKIPEEVRRELSPFYIHKIAVASEERDCEKIDKLTDDTAERTRSGLAPRWNDMDVNQHVNNVKYIGWILESVPIKVLEDYNMTSMTLEFRRECTQSNMLESMTCPTERVIGESDNNSVNRKPDLQYTHLLRLQDDKRDVVRARSEWNLKQTQQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04680 391 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 71 389 IPR045023 GO:0006633|GO:0016297
Trre5g04680 391 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 114 259 IPR029069 -
Trre5g04680 391 CDD 4HBT 116 232 - -
Trre5g04680 391 Gene3D Hotdog Thioesterase 107 390 - -
Trre5g04680 391 Pfam Acyl-ACP thioesterase 115 385 IPR002864 GO:0006633|GO:0016790
Trre5g04680 391 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 283 384 IPR029069 -
Trre5g04680 391 FunFam Acyl-[acyl-carrier-protein] hydrolase 107 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04680 Trre-Chr5 48772882 48775514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04680 107 387 Acyl Lipid Metabolism Gene Families AT1G08510 55.872 6.81e-109 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04680 K10781 - gmx:100791281 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04680 5 48772882 48775514 Trre5g04680 5 48772882 48775514 ECH