Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00977 ATGAATTCTGCTATGACATCATCAATGGTGGCACCCATCAATATGGGGAAACAACTTCTAGGAAATTGGTACAACACTAATAGAAGGTTTTCGTTATGTTCTCATTGTACTCCAGTGGGATTGAACACGAGGAATGGATTGAAAGATGTTCCATTGATTAATGGTACAACAAGAAGGAAGTTGGGAAATGAAAGCACAGAAGATTTTGCTACTTTCCTTCGTGGAAGTTTTGTCGAGGGCAGGTTTGTATATAGACAAAATTTCTTTGTGAGGTCTTACGAAACTGGGCCAGATAAGACTATCTCCATGGAGACACTCACCAACTTTCTCCAGGAAAGTGCTTTAAATCATGTAAGCAGCTGTGGGTTCAGTCAGAACAGTTTTGGAACTTCTTACGAGATGGATCTTCGAAAACTCATTTGGGTCGTTACTCGCATTCAGGTTCAAGTACAGAGATACAGCAGATGGGGGGATGAAATTGAGGTTGAAACTTGGATTGATGTTGGCGGAAAGAATGGGACACGAAGAGACTGGATAATCAGGGATCGTTACACCAAAGAAATCATAGCTAAAGCAACCAGCATGTGGGCAATCATGAATAGAGAAACAAGAAGATTATCCAAGATGCCTGAAGAAGTTAGACAAGAACTTGATCCTTTCTACTTTAACAAGTTTGCTATTGCCACTGAAGAAATAGATCAGCAGAAGATACAGAAGCTCACTGATGCCACCGCTGAGGGTTTTCGATTTGGAGTGACTGTAAAAGGCTATAAAATTTTATTAACTTGGTTTTTATCTGTGCACGCAATACTCCAGCCAGGGTGGAACGACATGGATGTTAACCAGCATGTTAACAACGCAAAATACACCAGATGGATCTCGGAGAGCGTGCCAAGAAAAATGTTAGAAGATTACAAAATGACAAGCATGATCTTAGAATTTCGGCGTGAATGTACGCATTCAGATATACTGGAATCAATGACAAGTGCATCAGCCAAAGTGATTGGTGCCTCAAACAATAAGTATGTTAGCAGAAAACCCAACCTGCAATTTATACACTTGCTTCGTCTACAAGACAATAAGACGGAGTTGGCTTGCTGTTTTGGTACTTCCAATCATGAAATGATTGACTGGTTTGGAAGCCTGTTGAAAAATGATTCCAATTTCACTGAATCTGCAGATCCTATTACCTTAGAAAGGTTTTCTAAGGTTAGCTTGTCCGTTTCACTCTTCGACATCGAATCTGCTCTCGATCTAGATCATTCCTTCCAAGTTAGGTCTTTCCACGTCTAA 1293 0.4037 MNSAMTSSMVAPINMGKQLLGNWYNTNRRFSLCSHCTPVGLNTRNGLKDVPLINGTTRRKLGNESTEDFATFLRGSFVEGRFVYRQNFFVRSYETGPDKTISMETLTNFLQESALNHVSSCGFSQNSFGTSYEMDLRKLIWVVTRIQVQVQRYSRWGDEIEVETWIDVGGKNGTRRDWIIRDRYTKEIIAKATSMWAIMNRETRRLSKMPEEVRQELDPFYFNKFAIATEEIDQQKIQKLTDATAEGFRFGVTVKGYKILLTWFLSVHAILQPGWNDMDVNQHVNNAKYTRWISESVPRKMLEDYKMTSMILEFRRECTHSDILESMTSASAKVIGASNNKYVSRKPNLQFIHLLRLQDNKTELACCFGTSNHEMIDWFGSLLKNDSNFTESADPITLERFSKVSLSVSLFDIESALDLDHSFQVRSFHV 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00977 430 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 271 331 IPR029069 -
Vian4g00977 430 Gene3D Hotdog Thioesterase 78 368 - -
Vian4g00977 430 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 81 225 IPR029069 -
Vian4g00977 430 CDD 4HBT 84 200 - -
Vian4g00977 430 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 59 364 IPR045023 GO:0006633|GO:0016297
Vian4g00977 430 Pfam Acyl-ACP thioesterase 83 358 IPR002864 GO:0006633|GO:0016790
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00977 Vian-Chr4 14536342 14557718 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00977 72 360 Acyl Lipid Metabolism Gene Families AT1G08510 44.983 3.80e-84 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00977 K10781 - gmx:100795014 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00977 4 14536342 14557718 Vian4g00977 4 14536342 14557718 ECH