Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0099 Acco07g1836 Accr6g01567 . . . . . . Alju05g0326 . . Apr10g0429 . . Bisa06g0420 . . . Dere11g0387 . Enph10g0897 Glsi07g1823 Gma03g00717 . . Gso3g0702 Lal14g0024 . . Lan12g0004 . . . . Lele37g1191 Lele38g1079 Lele39g0222 Lele40g1016 . . . . Mibi04g1825 . . Phco1g01521 Prci12g0350 . . . . . . Ssu4g2151 Sto1g2385 . . . . . Vimu9g01145 . . Vra9g0958
Pvu10g0100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0101 . . . . . . . . . . . . . . . . . Cca01g01673 . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01523 . . . Pumo7g01206 . . Spst4g01399 Ssu4g2153 . . . . . . Vimu9g01151 Viun10g00992 . Vra9g0961
Pvu10g0102 . . . . . . . . . . . Apr10g0426 . . . . . Cca01g01676 . . . Glsi07g1798 . . . . . . . . . . . . . . . . . . . . . . . Phco1g01524 . . . . Rops4g00798 . Spst4g01400 Ssu4g2154 Sto1g2391 . . . . . Vimu9g01149 Viun10g00991 . Vra9g0960
Pvu10g0103 . . . . . . . . . . . . . . . . . Cca01g01678 . . . . . . . . Lal14g0367 . . . Lan1g0854 . . Lasa7g00539 . . . . . . . . . . . . . . . . . Seca4g10575 Spst4g01406 . . . . . . Vifa2g05338 . . . .
Pvu10g0104 . . . . . . . . . . . . . . . . . Cca01g01680 . . . . . . . . Lal14g0025 . . Lan12g0005 . . . . . . . . . . . . . . . Phco1g01525 . . . . Rops4g00008 . Spst4g01408 . . . . . . . Vimu9g01153 . . Vra9g0962
Pvu10g0105 . . . . . . . . . . . . . . . . . Cca01g01681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst4g01409 . . . . . . . Vimu9g01155 . . Vra9g0963
Pvu10g0106 . . . . . . . . . . . . . . . . . Cca01g01683 . . . . Gma03g00544 . . Gso3g0536 . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu4g2157 . . . . . . . . . Vra9g0964
Pvu10g0107 . . . . . . . . . . . . . . . . . . . . . . Gma03g00718 . . Gso3g0705 . Lal7g0106 . . . . . Lasa7g00570 . . . . . . . . . . . . . Psa7g5426 . . . . Spst4g01411 . . . . Tsu06g00586 . . Vimu9g01160 . Vivi5g01222 Vra9g0965
Pvu10g0108 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal7g0105 . . . . . . . . . . . . . . . . . Phco1g01530 . Psa7g5425 . . . . Spst4g01412 . . . . . . . Vimu9g01161 . . Vra9g0966
   
Previous Page 2413 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vifa Vifa2g05338 Chr2 1588311842 1588313768 +
Pvu Pvu10g0099 Chr10 1515567 1524256 -
Acco Acco07g1836 Chr07 35367009 35370350 -
Accr Accr6g01567 Chr6 48615947 48619409 -
Alju Alju05g0326 Chr05 5370688 5374059 +
Apr Apr10g0429 Chr10 10494495 10503901 +
Bisa Bisa06g0420 Chr06 10367744 10371434 +
Dere Dere11g0387 Chr11 6547592 6551567 +
Enph Enph10g0897 Chr10 11525746 11529577 +
Glsi Glsi07g1823 Chr07 60697666 60701547 -
Gma Gma03g00717 Chr03 23313519 23319031 -
Gso Gso3g0702 Chr3 21824403 21829998 -
Lal Lal14g0024 Chr14 396431 408635 +
Lan Lan12g0004 Chr12 32233 38406 +
Lele Lele37g1191 Chr37 21330000 21333212 -
Lele Lele38g1079 Chr38 22095107 22101661 -
Lele Lele39g0222 Chr39 1470996 1474391 +
Lele Lele40g1016 Chr40 20523684 20526507 -
Mibi Mibi04g1825 Chr04 47880258 47883363 -
Phco Phco1g01521 Chr1 51797473 51808207 -
Prci Prci12g0350 Chr12 3086429 3090229 +
Ssu Ssu4g2151 Chr4 48599344 48605492 -
Sto Sto1g2385 Chr1 31672641 31677131 +
Vimu Vimu9g01145 Chr9 19024793 19030082 -
Vra Vra9g0958 Chr9 11565049 11570805 -
Pvu Pvu10g0100 Chr10 1517253 1517937 +
Pvu Pvu10g0101 Chr10 1534405 1538042 +
Cca Cca01g01673 Chr01 38469095 38469295 +
Phco Phco1g01523 Chr1 51852398 51853453 +
Pumo Pumo7g01206 Chr7 27123209 27126235 +
Spst Spst4g01399 Chr4 51794842 51795900 +
Ssu Ssu4g2153 Chr4 48746831 48747904 -
Vimu Vimu9g01151 Chr9 19085108 19085910 +
Viun Viun10g00992 Chr10 15442303 15446061 -
Vra Vra9g0961 Chr9 11608589 11611502 +
Pvu Pvu10g0102 Chr10 1540083 1543180 +
Apr Apr10g0426 Chr10 10418128 10421193 +
Cca Cca01g01676 Chr01 38477774 38480257 -
Glsi Glsi07g1798 Chr07 59762289 59765351 -
Phco Phco1g01524 Chr1 51905047 51906093 +
Rops Rops4g00798 Chr4 21388483 21391730 +
Spst Spst4g01400 Chr4 51821222 51823846 +
Ssu Ssu4g2154 Chr4 48827799 48828860 -
Sto Sto1g2391 Chr1 31726074 31727018 +
Vimu Vimu9g01149 Chr9 19063097 19064155 -
Viun Viun10g00991 Chr10 15442303 15446067 -
Vra Vra9g0960 Chr9 11594480 11597806 -
Pvu Pvu10g0103 Chr10 1547677 1554672 +
Cca Cca01g01678 Chr01 38497262 38499353 +
Lal Lal14g0367 Chr14 5149451 5149951 +
Lan Lan1g0854 Chr1 19354097 19365616 +
Lasa Lasa7g00539 Chr7 20734088 20750482 -
Seca Seca4g10575 Chr4 241921120 241936787 -
Spst Spst4g01406 Chr4 51884556 51898253 +
Vifa Vifa2g05338 Chr2 1588311842 1588313768 +
Pvu Pvu10g0104 Chr10 1575006 1580212 +
Cca Cca01g01680 Chr01 38512246 38526113 +
Lal Lal14g0025 Chr14 411803 430170 +
Lan Lan12g0005 Chr12 40163 53965 +
Phco Phco1g01525 Chr1 51958016 51985176 +
Rops Rops4g00008 Chr4 293423 333631 +
Spst Spst4g01408 Chr4 51901587 51906793 +
Vimu Vimu9g01153 Chr9 19096921 19118695 +
Vra Vra9g0962 Chr9 11625651 11651255 +
Pvu Pvu10g0105 Chr10 1596184 1599156 +
Cca Cca01g01681 Chr01 38551360 38553841 +
Spst Spst4g01409 Chr4 51937904 51940120 +
Vimu Vimu9g01155 Chr9 19141929 19144169 +
Vra Vra9g0963 Chr9 11662458 11664609 +
Pvu Pvu10g0106 Chr10 1603054 1606426 -
Cca Cca01g01683 Chr01 38579279 38583715 -
Gma Gma03g00544 Chr03 11543278 11547036 -
Gso Gso3g0536 Chr3 12001538 12004570 -
Ssu Ssu4g2157 Chr4 48949678 48952665 -
Vra Vra9g0964 Chr9 11674610 11678202 -
Pvu Pvu10g0107 Chr10 1640161 1643095 -
Gma Gma03g00718 Chr03 23537269 23539787 -
Gso Gso3g0705 Chr3 22078206 22080703 -
Lal Lal7g0106 Chr7 1080575 1083594 -
Lasa Lasa7g00570 Chr7 22787709 22789411 +
Psa Psa7g5426 Chr7 468250965 468254450 -
Spst Spst4g01411 Chr4 51949407 51954860 -
Tsu Tsu06g00586 Chr06 5062544 5065454 +
Vimu Vimu9g01160 Chr9 19185591 19188100 -
Vivi Vivi5g01222 Chr5 32136883 32139114 +
Vra Vra9g0965 Chr9 11685735 11688759 -
Pvu Pvu10g0108 Chr10 1648750 1652524 -
Lal Lal7g0105 Chr7 1063161 1083893 +
Phco Phco1g01530 Chr1 52098473 52101762 -
Psa Psa7g5425 Chr7 468247509 468250600 +
Spst Spst4g01412 Chr4 51998312 52001962 -
Vimu Vimu9g01161 Chr9 19216582 19220857 -
Vra Vra9g0966 Chr9 11702339 11706127 -