Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0089 . . . . . Ahy12g1963 . . . Amo12g2192 . . . . . . Car06g02477 . . . . . Gma03g00697 . Gso1g0939 Gso3g0679 Lal14g0253 . . . . . . . . . . . . Mal7g0300 . . . . . Phco1g01493 . . Pste6g01341 . . . Spst4g01368 . . . . Tsu06g00356 . . Vimu9g01101 . Vivi5g00539 .
Pvu10g0090 . . . . . Ahy12g1969 . . . Amo12g2200 . . . . . . Car06g02478 . . . . . . . Gso1g0941 Gso3g0680 . . . . . . . . . . . . . Mal7g0572 . . . . . . . . . . . . . . . . . Tsu06g00622 . . . . . Vra9g0939
Pvu10g0091 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01507 . . Pste6g00192 . . . . . . . . . . . Vimu9g01127 . . .
Pvu10g0092 . . Adu02g01813 . Aev02g1751 Ahy12g1871 Ahy2g1620 Aip02g02102 Alju05g0269 Amo12g2121 Amo02g2336 Apr10g0655 . . Bisa06g0335 . . . Dere11g0313 Dod07g1430 Enph10g0858 Glsi07g1906 . Gma01g01052 Gso1g0880 Gso3g0619 . . . . . . . . . . . . Lja3g3232 . . . Mibi04g1904 . . . Prci12g0291 Psa7g5515 . . . . Spst4g01383 . Sto1g2339 . . . . . Vimu9g01316 . . .
Pvu10g0093 . . . . . . . . . . . . . . . . . Cca01g01759 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu4g2240 . . . . . Vifa2g05384 . . . .
Pvu10g0094 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0095 . . . . . . . . . . . . . . . . . Cca01g01738 . . . . . Gma01g01044 Gso1g0872 Gso3g0611 . . . . . . . . . . . . . . . . . . . . . . . Pumo7g01348 . Seca2g01734 . . . . . . . . Vimu9g01135 . . .
Pvu10g0096 . . . . . . . . . . Amo02g2313 . . . . . Car06g02601 Cca01g01737 . Dod07g1422 . . . Gma01g01043 Gso1g0871 . Lal14g0257 . . . . . . . . . . . Lja3g3221 . . . . . . Phco1g01514 . . . Pumo7g01345 . Seca4g10642 . Ssu4g2225 . . . . . Vifa2g05245 Vimu9g01136 . . Vra9g0953
Pvu10g0097 . . Adu02g01797 . Aev02g1744 Ahy12g1849 Ahy2g1599 Aip02g02083 . . Amo02g2312 Apr10g0649 . . . Bva02g01444 Car06g02479 Cca01g01736 Dere11g0327 Dod07g1420 Enph10g0865 Glsi07g1891 . Gma01g01041 Gso1g0870 Gso3g0603 . . . . . . . . . . . . . . . . . . . . Prci12g0302 . . . . . . Ssu4g2223 Sto1g2345 . . . . . . . . Vra9g0954
Pvu10g0098 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Seca Seca2g01734 Chr2 32763372 32764546 -
Gso Gso1g0870 Chr1 35221618 35228257 -
Gso Gso3g0603 Chr3 17380193 17389123 -
Ahy Ahy12g1849 Chr12 98818012 98824695 -
Pvu Pvu10g0089 Chr10 1301038 1302852 -
Ahy Ahy12g1963 Chr12 101805576 101807468 -
Amo Amo12g2192 Chr12 100941245 100943110 -
Car Car06g02477 Chr06 27916879 27918938 -
Gma Gma03g00697 Chr03 22046488 22049225 -
Gso Gso1g0939 Chr1 37796342 37803366 -
Gso Gso3g0679 Chr3 20603919 20606485 -
Lal Lal14g0253 Chr14 2938396 2941656 -
Mal Mal7g0300 Chr7 6538801 6540380 -
Phco Phco1g01493 Chr1 51202390 51205081 -
Pste Pste6g01341 Chr6 5768329 5771608 -
Spst Spst4g01368 Chr4 51289537 51290678 -
Tsu Tsu06g00356 Chr06 2968679 2971228 -
Vimu Vimu9g01101 Chr9 18418209 18418604 -
Vivi Vivi5g00539 Chr5 8886140 8888408 +
Pvu Pvu10g0090 Chr10 1305804 1317609 +
Ahy Ahy12g1969 Chr12 101920309 101930823 +
Amo Amo12g2200 Chr12 101107151 101122203 +
Car Car06g02478 Chr06 27929278 27943372 +
Gso Gso1g0941 Chr1 37925509 37952323 +
Gso Gso3g0680 Chr3 20607119 20615965 -
Mal Mal7g0572 Chr7 15290802 15297242 +
Tsu Tsu06g00622 Chr06 5365498 5373515 +
Vra Vra9g0939 Chr9 11216949 11221938 +
Pvu Pvu10g0091 Chr10 1323113 1329204 -
Phco Phco1g01507 Chr1 51381059 51385970 -
Pste Pste6g00192 Chr6 622868 630940 -
Vimu Vimu9g01127 Chr9 18678517 18681101 -
Pvu Pvu10g0092 Chr10 1337670 1340223 -
Adu Adu02g01813 Chr02 77900840 77902583 -
Aev Aev02g1751 Chr02 19284077 19286000 -
Ahy Ahy12g1871 Chr12 99473468 99475295 -
Ahy Ahy2g1620 Chr2 85766132 85768282 -
Aip Aip02g02102 Chr02 90285102 90286935 -
Alju Alju05g0269 Chr05 4047010 4047933 +
Amo Amo12g2121 Chr12 98874557 98876510 -
Amo Amo02g2336 Chr02 75511205 75513443 -
Apr Apr10g0655 Chr10 15902335 15903900 -
Bisa Bisa06g0335 Chr06 8479779 8487840 +
Dere Dere11g0313 Chr11 5513720 5514744 +
Dod Dod07g1430 Chr07 38822024 38824103 -
Enph Enph10g0858 Chr10 11048144 11049642 +
Glsi Glsi07g1906 Chr07 62080648 62084556 -
Gma Gma01g01052 Chr01 37375430 37376942 -
Gso Gso1g0880 Chr1 35778107 35779711 -
Gso Gso3g0619 Chr3 18053458 18055040 -
Lja Lja3g3232 Chr3 62985724 62987776 -
Mibi Mibi04g1904 Chr04 49423236 49424123 -
Prci Prci12g0291 Chr12 2429131 2430326 +
Psa Psa7g5515 Chr7 473061608 473064624 +
Spst Spst4g01383 Chr4 51558396 51559488 -
Sto Sto1g2339 Chr1 31268917 31269969 +
Vimu Vimu9g01316 Chr9 21324429 21331797 +
Pvu Pvu10g0093 Chr10 1351654 1356713 +
Cca Cca01g01759 Chr01 41208520 41218091 -
Ssu Ssu4g2240 Chr4 53225736 53230519 -
Vifa Vifa2g05384 Chr2 1603335322 1603337134 -
Pvu Pvu10g0094 Chr10 1363797 1365269 -
Pvu Pvu10g0095 Chr10 1452337 1453111 +
Cca Cca01g01738 Chr01 40681436 40682217 +
Gma Gma01g01044 Chr01 37066890 37067638 +
Gso Gso1g0872 Chr1 35455885 35456612 +
Gso Gso3g0611 Chr3 17796936 17797732 +
Pumo Pumo7g01348 Chr7 33580298 33581275 +
Seca Seca2g01734 Chr2 32763372 32764546 -
Vimu Vimu9g01135 Chr9 18805791 18806870 +
Pvu Pvu10g0096 Chr10 1464249 1464749 -
Amo Amo02g2313 Chr02 74995050 74995628 +
Car Car06g02601 Chr06 31801279 31801763 +
Cca Cca01g01737 Chr01 40669336 40669954 +
Dod Dod07g1422 Chr07 38699514 38705319 +
Gma Gma01g01043 Chr01 37028279 37032514 +
Gso Gso1g0871 Chr1 35420928 35421591 +
Lal Lal14g0257 Chr14 3007254 3007760 +
Lja Lja3g3221 Chr3 62638754 62639221 +
Phco Phco1g01514 Chr1 51536903 51537409 -
Pumo Pumo7g01345 Chr7 33429404 33432161 +
Seca Seca4g10642 Chr4 243059589 243060095 +
Ssu Ssu4g2225 Chr4 52503323 52503829 +
Vifa Vifa2g05245 Chr2 1563700075 1563700464 -
Vimu Vimu9g01136 Chr9 18815077 18815577 -
Vra Vra9g0953 Chr9 11422892 11423593 -
Pvu Pvu10g0097 Chr10 1486644 1493486 +
Adu Adu02g01797 Chr02 77327607 77334074 -
Aev Aev02g1744 Chr02 19205243 19209378 -
Ahy Ahy12g1849 Chr12 98818012 98824695 -
Ahy Ahy2g1599 Chr2 85135503 85142650 -
Aip Aip02g02083 Chr02 89670176 89676014 -
Amo Amo02g2312 Chr02 74854697 74861688 -
Apr Apr10g0649 Chr10 15509447 15516074 -
Bva Bva02g01444 Chr02 17786265 17790873 -
Car Car06g02479 Chr06 27944874 27948727 -
Cca Cca01g01736 Chr01 40596203 40602989 -
Dere Dere11g0327 Chr11 5699966 5705030 +
Dod Dod07g1420 Chr07 38640857 38647138 -
Enph Enph10g0865 Chr10 11145817 11150054 +
Glsi Glsi07g1891 Chr07 61845008 61850280 -
Gma Gma01g01041 Chr01 36853129 36859552 -
Gso Gso1g0870 Chr1 35221618 35228257 -
Gso Gso3g0603 Chr3 17380193 17389123 -
Prci Prci12g0302 Chr12 2564173 2570373 +
Ssu Ssu4g2223 Chr4 52273461 52279406 -
Sto Sto1g2345 Chr1 31384286 31386061 +
Vra Vra9g0954 Chr9 11491734 11499317 +
Pvu Pvu10g0098 Chr10 1509087 1510738 +
Ahy Ahy12g1969 Chr12 101920309 101930823 +