Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0966 ATGGATCGTACTGACAAGGAGCAGCTATCCTTGGTCAAGGGTACAAGGCAAAGATACAATGAATGGATTTTTCGTGATGTTCCAAGTGATATAACAATAGAAGTGAATGGCGGATCATTTTCATTGCACAAGTTTCCTCTTGTCTCCAGAAGTGGCAGAATAAGGAGAATAGTTGCAGAACACAGGGGTGATGATATCTCAAGATTTGAGCTTCTTAATCTACCAGGAGGAGCTGAATGCTTCGAGTTGGCAGCAAAATTTTGTTATGGCATTAACTTTGAGATTACATCCACAAATGTTGCTCAGCTATGCTGTGTTTCTGATTACCTTGAAATGACTGAAGACTTTTCAAAAGACAACCTTGGCTCGCGTGCTGAGGAATACCTTGAGAGTATAGTTTGCAAGAATCTCGAAATGTGTGTTGAAGTCTTGCAACAATGTGAGAGCCTGCTGCCTCTTGCTGATGAGCTAAAAGTAGTTAGCCGCTGCATTGATGCAATAGCTTCAAAAGCATGTGCAGAACAAATAGCGTCTAGTTTCTCAAGATTAGAGTATAGCAGCTCAGGAAGGTTACACATGAGTAGGCAAGCCAAATGCGATGGTGACTGGTGGATAGAAGATCTTTCTGTTCTGAGAATTGATATGTATCAAAGAGTCATAACGGCCATGAAATGCCGTGGGGTTCGGCCAGAGAGTATTGGTGCTTCCCTTGTGAATTATGCACAGAAAGAACTGACAAAGAAATCCAGCTTGTGGAATCCATCTAGCCAGACTAAGATTGATTCAAATTCCACATTACATGAAAAGCTTGTGGTTGAGACCATTGTTAGCCTTTTGCCAGTGGAAAAACTTGCTGTTCCAATCAATTTCCTTTTCGGGCTTCTGCGAAGTGCAGTTATGCTGGATTGTACAATTGCTTCTAGACTTGACTTGGAAAGAAGGATTGGATCACAGATAGATGTTGCCACCCTTGATGATATCTTGATTCCATCTTTCAGGCATGCAGGTGATACCTTGTTTGATGTTGACACAGTTCATAGAATTTTGGTAAATTTCTTTCAGCAGGATGATAGTGAAGAAGATCCAGAAGATGCATTTGTTTTTGAATCTGACAGCCCTCGTTCACCCTCCCAAACTGCATTAGTCAAAGTGTCAAAACTAGTGGATAACTACCTCGCTGAAATAGCCCCCGATGCAAACCTGAAACTTTCCAAGTTTTTGGTCATTGCAGAAACCTTGCCTGCACATGCCCGCACAGTTCATGATGGTTTATATCGCGCCATTGATATTTACTTAAAAGCACACCAAGGTTTGTCAGATTTGGACAAGAAAAAGCTATGCAGATTGATTGACTTTCAAAAGCTTTCTCAAGAAGCTGGAGCACACGCTGCGCAAAATGAGCGTCTTCCTCTTCAATCAATAGTGCAAGTTCTGTATTTTGAACAGCTAAGACTTAGAAATTCTTTGTCCTGCTCCTACGGGGAAGATGACCCCAAGCCAATACACCAGTCATGGCGCATAAGCAGTGGTGCACTAAGTGCCGCAATGTCTCCACGAGACAACTATGCATCACTGAGACGCGAAAACCGTGAGCTTAAACTTGAATTGGCACGTCTAAGAATGAGACTAAACGATCTGGAGAGGGAGCATGCTTGCATGAAGAGGGATATGGCTAAGTCCGGATCGCGTAAATTTATGAGTTCTTTCTCCAAAAAAATTGGTAAGCTCAGTCTTTTTGGGCATAGTTCTTCTCGAGGATCAACTTCTCCATCAAGGAATTCTCATAGAACAGATTCAAAGGTGATTGAGAGAACCTGTGCCAGCACAGAGTAG 1833 0.4228 MDRTDKEQLSLVKGTRQRYNEWIFRDVPSDITIEVNGGSFSLHKFPLVSRSGRIRRIVAEHRGDDISRFELLNLPGGAECFELAAKFCYGINFEITSTNVAQLCCVSDYLEMTEDFSKDNLGSRAEEYLESIVCKNLEMCVEVLQQCESLLPLADELKVVSRCIDAIASKACAEQIASSFSRLEYSSSGRLHMSRQAKCDGDWWIEDLSVLRIDMYQRVITAMKCRGVRPESIGASLVNYAQKELTKKSSLWNPSSQTKIDSNSTLHEKLVVETIVSLLPVEKLAVPINFLFGLLRSAVMLDCTIASRLDLERRIGSQIDVATLDDILIPSFRHAGDTLFDVDTVHRILVNFFQQDDSEEDPEDAFVFESDSPRSPSQTALVKVSKLVDNYLAEIAPDANLKLSKFLVIAETLPAHARTVHDGLYRAIDIYLKAHQGLSDLDKKKLCRLIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLRLRNSLSCSYGEDDPKPIHQSWRISSGALSAAMSPRDNYASLRRENRELKLELARLRMRLNDLEREHACMKRDMAKSGSRKFMSSFSKKIGKLSLFGHSSSRGSTSPSRNSHRTDSKVIERTCASTE* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0966 610 Coils Coil 522 556 - -
Vra9g0966 610 ProSiteProfiles NPH3 domain profile. 202 484 IPR027356 -
Vra9g0966 610 PANTHER OS12G0117600 PROTEIN 16 597 IPR043454 -
Vra9g0966 610 SUPERFAMILY POZ domain 16 114 IPR011333 -
Vra9g0966 610 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 16 597 - -
Vra9g0966 610 Gene3D Potassium Channel Kv1.1; Chain A 12 130 IPR011333 -
Vra9g0966 610 MobiDBLite consensus disorder prediction 580 595 - -
Vra9g0966 610 MobiDBLite consensus disorder prediction 578 610 - -
Vra9g0966 610 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Vra9g0966 610 Pfam NPH3 family 202 459 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0966 Vra-Chr9 11702339 11706127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0966 20 559 EF-hand Containing Proteins AT3G44820 35.377 7.10e-113 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0966 - - gmx:100799524 1125.54