Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0962 ATGGCCGTACGGGCAGTTGCCACCTGCTCCCTCTTCCGCCCTCCCTCTCCGCCCCTCTTACCCTCCGCCCTCCGCCTCTTCTCCTCTCCCTTCCGCTGCTCCTGCTCCCTCCGTCATGGCGCCAAAACCTACCACCGCTCCTTCCACTCCGTCTTCGACAGCGTCATGGAAGAGCTCCGTGCGGCTCGCAGAAGCCGCCACAAGCGTGTCTCCGCCGCGGGTTCCAGCACGGGATTCTTGAATGAAGAGCTTGTTGAAGATAGACTTGTAAACCGTTCATTGCAGAAAGGGTTGCTTTTGGAATTCAAGAAGGATTCTGATAGAGTATTGCTAGCAGTAGCTCAAAGACCTGATGGCAAGAAGAACTGGATGGTTTCTGATCAGAATGGTGTCACTTCTTCCATCAAACTGCAGCAAGTGACATATATTGTTCCTGGTATTGATAATTTTGACCAAGCAGATATCACAGATTTTGCTCTAAAGGCTCAGGATAACATGGACCTGTCTCTACTTGAATATGCTTGGATTGAGCTCCTAGAAAAGAATAAGTCTGTCACAGTTGAAGAGTTGGCCGAGATAATTTTTGGTAGCACCGAGCCCCTTGACAGCTATTCTGCTCATCTCTTGCTATCAAAAGATGAAGTATACTTTACTGTATTGGAGACTAAAGGATCTCGTTCCATTTACGGACCTCGACCAAGTAGGCAGGTTGAGGAGCTCATTCGCAGGAAGCTTGCAAAGGAGGCTGCTGAGAAAGAATTTTTAGAGTTTATTGAATTACTGGCCTCTGTGAAGTCCATGTCTTTACAAGATAAACCTCCAAAATCTTCCTGGACCAATGATGAAAAAAATTGGAGGAGAATTGAGTCACTTGTAGCATATGCTATTGATTCATGTAAAAGTGATGAACAAAGAAAAACAGCTGGGATGATACTGAAGGAATTGGGTCTGGCAAAGACAAGTTCCTCAGCCGTTAAACTTCTGATAGATATTGGATATTTTCCTGTACATATCAATCTTGATCTATTGAGATCCGGAATTCCCACTGATCATTCAGAAGAAATCATATCTGCTGCACAGTGTCTTTTATTGGACATATCTGATCCAGACAAGATTGACAGGAAGAATCTTACTGATTTAAAGGTCTATGCCATTGATGTTGATGAGGCTGATGAGCTTGATGATGCTTTGAGTGCAACAAAGTTGCAAGATGGCCGGATTCAAGTTTGGATACATGTTGCAGATCCAACTAGATATGTTCAACCTGGAAGTATAGTGGACAGAGAGGCTATGAGAAGAGGAACTTCTGTTTTCTTGCCCACTGCTACCTATTCTATGTTTCCAGAAAATCTTGCCATGGGGGGCATGAGTTTGCGACAAGGAGAGCTTTGTAATGCTGTTACTGTATCAGTTGTGCTGCATAATGATGGCAGCATTGCAGAATATTCAGTTTTTAACTCAGTGATTAAACCAACATACATGCTGACATATGAGAGTGCATCCGAGCTACTCCATTTGAATCTTCAGGAGGAGGGTGAGCTCAGAATTTTGTCTGAGGCTGCAAACCTTAGATCAAATTGGCGTCGTCAACAGGGTGCAATTGAGACGTCAACTTTAGATACTCGGATTAAAGTATTTAATCCAGAGGATCCAGAGCCTTCATTAAAACTTTATGTGGAAAACCAGGCAGATCCTGCCATGCGTTTAGTCTTTGAGATGATGATACTCTGTGGAGAAGCTATTGCCATGTTTGGATCTCAGAATGACATTCCCTTACCATACAGGGGACAGCCGCAATCAGATATAAATGTTTCCGAATTTTCCCATCTTCCAGAAGGACCTGTTAGGAGCTTTGCACTGGTCAAGGTAATGCGTGCGGCTGAAATTGATTTTAGGAAGCCAGCACGCCATGGTGTTTTGGGGATTCCTGGTTATGTTCAGTTTACATCTCCCATCCGTAGATATTTGGATCTTCTTGCACATTATCAAGACCGGAGTTCGAAACACATGATTGGCACAGGATGTGAGTCTCATGGCCTCTATCTTCTACGCCCTTCTCCACATGCTGGCATAATCATGGAGTCACCATCCCTTCTTCATGCTCAGTTAGGTCATCCCAGCCTTGCCAAACTACAGCAACTTGTTCCGAGTTTGTCGAAGTTATCAAGTTTGTCGTGTGAGTCTTGTCAGTTAGGAAAGCATACTTGTAGTTCCTTTCCTCGTAGTGTGTCACAAAGAGCATCTTCTCCTTTTTCATTAGTCCATTCTGATATTTGGGGTCCTAGTCGTGTTAAGTCCACTTTAGGCTTTCAGTATTTTGTTACTTTTATTGATGACTATTCAAGATGTACTTGGTTGTTTTTAATGAAGAATCATTCTGAGTTGTTTTTTATTTTCCAATCATTTTTCAATGAAATAAAAACACAGTTTGGGGTTTCTATTCGAACTTTACGCAGTGATAATGGCCGTGAATACCTTTCTTCACCATTTAAACATTTTATGGCTTCTCATGGCATTCTTCACCAGACCTCATGTGCTTATACTCCTCAACAAAATGGGGTNGCTGAGCGCAANAATAGACACCTTATTGAAACAACTCGTACACTTCTAATCCATGGCCAAGTNCCCTCGCGTTTTTGGGGTGATGCAGTTCTCACTGCATGTTATCTCATAAACCGNATGCCGTCTTCTGTCCTAGATAACAAAATCCCTCATTCCGTCTTATTCCCTCAAGACCCTTTACATCCATTACCTCTTAGAGTTTTTGGGTCTACATGTTTTGTNCATGATTTTAGTCCTGGTCTTGATAAGTTATCTCCTAGATCTCACAAATGTGTCTTCTTAGGATTTCCTCGGTCACAAAAGGGCTATAAGTGTTTTTCCCCTTCCCTCAATCGTCATTTCATCTCCGCTGATGTCACCTTTGATGAATCTTCGTTTTATTTTTCTCATCTATCCTCTAGTTCTGTAGCTCCACCTCCTACTGTTGATATTCCTATTGTCGGTGATCCTTTAGATTCTCATTCCCCACATGATCATCCTTCAACTCCACCCCTTCAAGTTTATAGTCGCCGCAATCGTCTCCCTCATGACTCACCTCCTGTGCCGCCTCCTGTGTCTCCTCCGGCTCCAGCAAATGAGTCTGACCTGCCTATTGCCCTTCGTAAAGGTATACGCTCTACTCATAACCCTTCCCCCCATTATACTGTTCTTAGTTACCACAAATTATCTCCATCTTTTGACACATGTCTCTCATCCATTTCTTCTGTGTCCATTCCCAAGTCTGTGGGTGATGCCTTAACTCATCCTGGTTGGCGTCAAGCCATGCTGGATGAATTAAGTGCTTTACAGAAAAGTGGAACTTGGGAGCTTGTCCAATTACCATCTGGAAAGTCTGTTGTTGGTTGCAGGTGGGTGTATGCTATCAAAGTTGGCCCTGATGGTACAATTGATCGTTTGAAGGCTCGACTTGTTGCCAAAGGATACACACAAATTTTTGGTTTGGATTATGGTGATACTTTTTCTCCAGTGGCGAAAATGACCTCTGTTCGCCTTTTCATTACCATGGCCGCTCTTCGTCAATGGCCTCTTTACCAACTTGATGTCAAAAATGCTTTCCTTAATGGTGATTTGCAGGAAGAAATTTACATGGAGCAACATGCTGATTGGGTTGGTTCCCCTTCTGATAGGAGGTCTANTTCTGGATATTGTGTAAAGGCATTCCTTAGAGGGGAGCTTCCACCCTTTACAGCTGGTAAGCTTGAAGGGATAGCAGCTGCTATCAATGAGAATGTTAGAACAGTGAGGAAACTCTGCAACAGTAGTCTTCGATACTGGATATTAGAATATTTACGAAGACAACCAAAAGAGAAACCGTATCGTGCATTGGTTCTTAGATTTTTGAAAGATCGAATTGCAGCTCTATTGCTGGTGGAGGTTGGATTTCAAGCTTCTGCCTGGGTCTCTATTGGATCACAGATAGGGGATGAAGTATTAGTTAAAGTGGAAGAAGCGCATCCGCGTGATGATATTCTTTTTCTGAAGGAGGTTGTAAAAGAGTGA 4062 0.4313 MAVRAVATCSLFRPPSPPLLPSALRLFSSPFRCSCSLRHGAKTYHRSFHSVFDSVMEELRAARRSRHKRVSAAGSSTGFLNEELVEDRLVNRSLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVSDQNGVTSSIKLQQVTYIVPGIDNFDQADITDFALKAQDNMDLSLLEYAWIELLEKNKSVTVEELAEIIFGSTEPLDSYSAHLLLSKDEVYFTVLETKGSRSIYGPRPSRQVEELIRRKLAKEAAEKEFLEFIELLASVKSMSLQDKPPKSSWTNDEKNWRRIESLVAYAIDSCKSDEQRKTAGMILKELGLAKTSSSAVKLLIDIGYFPVHINLDLLRSGIPTDHSEEIISAAQCLLLDISDPDKIDRKNLTDLKVYAIDVDEADELDDALSATKLQDGRIQVWIHVADPTRYVQPGSIVDREAMRRGTSVFLPTATYSMFPENLAMGGMSLRQGELCNAVTVSVVLHNDGSIAEYSVFNSVIKPTYMLTYESASELLHLNLQEEGELRILSEAANLRSNWRRQQGAIETSTLDTRIKVFNPEDPEPSLKLYVENQADPAMRLVFEMMILCGEAIAMFGSQNDIPLPYRGQPQSDINVSEFSHLPEGPVRSFALVKVMRAAEIDFRKPARHGVLGIPGYVQFTSPIRRYLDLLAHYQDRSSKHMIGTGCESHGLYLLRPSPHAGIIMESPSLLHAQLGHPSLAKLQQLVPSLSKLSSLSCESCQLGKHTCSSFPRSVSQRASSPFSLVHSDIWGPSRVKSTLGFQYFVTFIDDYSRCTWLFLMKNHSELFFIFQSFFNEIKTQFGVSIRTLRSDNGREYLSSPFKHFMASHGILHQTSCAYTPQQNGVAERXNRHLIETTRTLLIHGQVPSRFWGDAVLTACYLINRMPSSVLDNKIPHSVLFPQDPLHPLPLRVFGSTCFVHDFSPGLDKLSPRSHKCVFLGFPRSQKGYKCFSPSLNRHFISADVTFDESSFYFSHLSSSSVAPPPTVDIPIVGDPLDSHSPHDHPSTPPLQVYSRRNRLPHDSPPVPPPVSPPAPANESDLPIALRKGIRSTHNPSPHYTVLSYHKLSPSFDTCLSSISSVSIPKSVGDALTHPGWRQAMLDELSALQKSGTWELVQLPSGKSVVGCRWVYAIKVGPDGTIDRLKARLVAKGYTQIFGLDYGDTFSPVAKMTSVRLFITMAALRQWPLYQLDVKNAFLNGDLQEEIYMEQHADWVGSPSDRRSXSGYCVKAFLRGELPPFTAGKLEGIAAAINENVRTVRKLCNSSLRYWILEYLRRQPKEKPYRALVLRFLKDRIAALLLVEVGFQASAWVSIGSQIGDEVLVKVEEAHPRDDILFLKEVVKE* 1354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0962 1353 PANTHER EXORIBONUCLEASE II, MITOCHONDRIAL 1238 1350 - -
Vra9g0962 1353 PANTHER EXORIBONUCLEASE II, MITOCHONDRIAL 41 663 - -
Vra9g0962 1353 Pfam RNB domain 374 663 IPR001900 GO:0003723|GO:0004540
Vra9g0962 1353 SUPERFAMILY Nucleic acid-binding proteins 324 663 IPR012340 -
Vra9g0962 1353 Gene3D - 742 922 IPR036397 GO:0003676
Vra9g0962 1353 SMART RNB_2 374 670 IPR001900 GO:0003723|GO:0004540
Vra9g0962 1353 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1121 1220 IPR013103 -
Vra9g0962 1353 PANTHER RIBONUCLEASE 1238 1350 - -
Vra9g0962 1353 PANTHER RIBONUCLEASE 41 663 - -
Vra9g0962 1353 ProSiteProfiles Integrase catalytic domain profile. 746 912 IPR001584 GO:0015074
Vra9g0962 1353 SUPERFAMILY Ribonuclease H-like 746 906 IPR012337 -
Vra9g0962 1353 Pfam GAG-pre-integrase domain 696 734 IPR025724 -
Vra9g0962 1353 Pfam Integrase core domain 749 849 IPR001584 GO:0015074
Vra9g0962 1353 MobiDBLite consensus disorder prediction 993 1061 - -
Vra9g0962 1353 MobiDBLite consensus disorder prediction 1030 1045 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0962 Vra-Chr9 11625651 11651255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0962 1071 1218 Receptor kinase-like Gene Family AT4G23160 50.676 2.83e-40 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0962 K01147 - gmx:100803243 1105.89