Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01161 ATGGCCAAAGAATTCCCCCAACAGCAACATCTCCAACTGGGTCTCTGTCTCTTTCCACACTTCGCTGCTTACTACCTTAAACTCACTGCTACTATACTTTTATCTTTCCTTTCACATTCGGTTCTGTTTTACTATCTTGTTTTTTCTCACTTCCTATGGATCGTACTGACAAGGAGCAGCTATCCTTGGTCAAGGGTACAAGGCAAAGATACAATGAATGCTTCCTGTAGTTTAAAGAAAACAGTTCCATTTATTCTTCTTAGAAGGGAAATGCATATGATTTTTCGTGATGTTCCAAGTGATATAACAATAGAAGTGAATGGCGGATCATTTTCGTTGCACAAGTTTCCTCTTGTCTCCAGAAGTGGCAGAATAAGGAGAATAGTTGCAGAACACAGGGGTGATGATATCTCAAGATTTGAGCTTCTTAATCTACCAGGAGGTGCTGAATGCTTCGAGTTGGCAGCAAAATTTTGTTATGGCATTAACTTTGAGATTACATCAACAAATGTTGCTCAGCTATGCTGTGTTTCTGATTACCTTGAAATGACTGAAGACTTTTCAAAAGACAACCTTGGCTCGCGTGCTGAGGAATACCTTGAGAGTATAGTTTGCAAGAATCTCGAAATGTGTGTTGAAGTCTTGCAACAATGTGAGAGCCTGCTGCCTCTTGCTGATGAGCTAAAAGTAGTTAGCCGCTGCATTGATGCAATAGCTTCAAAAGCATGTGCAGAACAAATAGCGTCTAGTTTCTCAAGATTAGAGTATAGCAGCTCAGGAAGGTTACACATGAGTAGGCAAGCCAAATGCGATGGTGACTGGTGGATAGAAGATCTTTCTGTTCTGAGAATTGATATGTATCAAAGAGTCATAACGGCCATGAAATGCCGTGGGGTTCGGCCAGAGAGTATTGGTGCTTCCCTTGTGAATTATGCACAGAAAGAACTGACAAAGAAATCCAGCTTGTGGAATCCATCTAGCCAGACTAAGATTGATTCAAATTCCACATTACATGAAAAGCTTGTGGTTGAGACCATTGTTAGCCTTTTGCCTGTGGAGAAACTTGCTGTTCCAATCAATTTCCTTTTCGGGCTTCTGCGAAGTGCAGTGATGCTGGATTGTACAATTGCTTCTAGACTTGACTTGGAAAGAAGGATTGGATCACAGATAGATGTTGCCACCCTTGATGATATCTTGATTCCATCTTTCAGGCATGCGGGTGATACCTTGTTTGATGTTGACACAGTTCATAGAATTTTGGTAAATTTCTTTCAGCAGGATGATAGTGAAGAAGATCCAGAAGATGCATTTGTTTTTGAATCTGACAGCCCTCGTTCACCCTCCCAAACTGCATTAGTCAAAGTATCAAAACTAGTGGATAACTACCTCGCTGAAATAGCCCCCGATGCAAACCTGAAACTTTCCAAGTTTTTGGTCATTGCAGAAACCTTGCCTGCACATGCCCGCACAGTTCATGATGGTTTATATCGCGCCATTGATATTTACTTAAAAGCACACCAAGGTTTGTCAGATTTGGACAAGAAAAAGTTATGCAGATTGATTGACTTTCAAAAGCTTTCTCAAGAAGCTGGAGCACACGCTGCGCAAAATGAGCGTCTTCCTCTACAATCAATAGTGCAAGTTCTGTATTTTGAACAGCTAAGACTTAGAAATTCTCTGTCCTGCTCATACGGGGAAGATGACCCCAAGCCAATACACCAGTCATGGCGCATAAGCAGTGGTGCACTAAGTGCCGCAATGTCTCCACGGGACAACTATGCATCACTGAGACGAGAAAACCGTGAGCTTAAACTTGAATTGGCACGTCTAAGAATGAGACTAAACGATCTGGAGAGGGAGCATGCTTGCATGAAGAGGGACATGGCTAAGTCCGGATCGCGTAAATTTATGAGTTCTTTCTCCAAAAAAATTGGTAAGCTCAGTCTTTTTGGGCATAGTTCTTCTCGAGGATCAACTTCTCCATCCAGGAATTCTCATAGAACAGATTCAAAGGTGATTGAGAGAACCTGTGCCAGCACAGAGTAG 2046 0.4198 MAKEFPQQQHLQLGLCLFPHFAAYYLKLTATILLSFLSHSVLFYYLVFSHFLWIVLTRSSYPWSRVQGKDTMNASCSLKKTVPFILLRREMHMIFRDVPSDITIEVNGGSFSLHKFPLVSRSGRIRRIVAEHRGDDISRFELLNLPGGAECFELAAKFCYGINFEITSTNVAQLCCVSDYLEMTEDFSKDNLGSRAEEYLESIVCKNLEMCVEVLQQCESLLPLADELKVVSRCIDAIASKACAEQIASSFSRLEYSSSGRLHMSRQAKCDGDWWIEDLSVLRIDMYQRVITAMKCRGVRPESIGASLVNYAQKELTKKSSLWNPSSQTKIDSNSTLHEKLVVETIVSLLPVEKLAVPINFLFGLLRSAVMLDCTIASRLDLERRIGSQIDVATLDDILIPSFRHAGDTLFDVDTVHRILVNFFQQDDSEEDPEDAFVFESDSPRSPSQTALVKVSKLVDNYLAEIAPDANLKLSKFLVIAETLPAHARTVHDGLYRAIDIYLKAHQGLSDLDKKKLCRLIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLRLRNSLSCSYGEDDPKPIHQSWRISSGALSAAMSPRDNYASLRRENRELKLELARLRMRLNDLEREHACMKRDMAKSGSRKFMSSFSKKIGKLSLFGHSSSRGSTSPSRNSHRTDSKVIERTCASTE 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01161 681 ProSiteProfiles BTB domain profile. 100 168 IPR000210 GO:0005515
Vimu9g01161 681 Gene3D Potassium Channel Kv1.1; Chain A 86 189 IPR011333 -
Vimu9g01161 681 PANTHER OS12G0117600 PROTEIN 96 658 IPR043454 -
Vimu9g01161 681 Coils Coil 593 627 - -
Vimu9g01161 681 MobiDBLite consensus disorder prediction 649 681 - -
Vimu9g01161 681 ProSiteProfiles NPH3 domain profile. 273 555 IPR027356 -
Vimu9g01161 681 SUPERFAMILY POZ domain 87 185 IPR011333 -
Vimu9g01161 681 MobiDBLite consensus disorder prediction 651 666 - -
Vimu9g01161 681 Pfam NPH3 family 273 530 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01161 Vimu-Chr9 19216582 19220857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01161 100 630 EF-hand Containing Proteins AT3G44820 35.651 5.25e-111 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01161 - - gmx:100799524 1092.41