Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1016 ATGGCGGCAGAGCCACCTTCACCGACGGAGGTCCACCTGAGGATCAATTCTCGGAAGAACGACAATGTGATACACCCAGCGGAGGCAGGCGTGGCTCTGCCTTATTCAACAACTAGAACGCCGGTAGAATATACCGAAGTAAAGCATTTCAGGAGATGGTTTTCCTGGCTAATTCCTGTCATTGTTATTGCCAACATCGCTGTGTTCGTAATTACCATGTACGTCAACAATTGCCCCAAAAACTCTGTCTCTTGTGTTGCCCGCTTCCTCGGTCGTTTCTCCTTTCAGCCGCTCAAAGAGAACCCTCTTCTCGGGCCCTCTTCATTAACGCTACAGAAGATGGGAGCTCTTGATGTAGGTAGGGTGGTTCATAGACATCAGGGCTGGCGCCTTATCACTTGCATGTGGTTACATGGTGGTGTCTTCCATCTACTGGCAAATATGTTGGGTGTTCTGATAATTGGGATCCGGCTTGAGCAAGAATTTGGATTCTTGCGTATTGGATTGCTATTTTTGATTTCTGGATTTGGGGGAAGTTTGCTTTCTGCTCTTTTCATCCAGTCAAACATCTCTGTGGGTGCCTCTGGAGCTCTTTTTGGACTGCTGGGAGGCATGCTTTCTGAACTCATTACTAATTGGTCTATGTATGATAACAAGTTTGCAGCACTCTTCACTCTTGTGATTATCGTTGCAGTCAATCTAGCTGTAGGGATCCTCCCACATGTGGACAATTTTGCTCATATTGGAGGATTTATTACAGGATTTCTTCTTGGATTTGTGTTTCTGATCCGTCCTCAGTTTGGCTGGGTTAGCCAAAGATATGCTTCTCCAGATTACTCTTCTGCCTCAGTTAGAAGATCTAAGTTCAAAAAATACCAGTGCATGTTATGGATCCTCTCTCTGATCCTTGTCATTGCTGGAATTACTGTTGGCCTTATTGCACTTCTCCGTGGTGTCGATGCCAATGATCATTGTTCTTGGTGCCATTATCTATCTTGTGTCCCAACTTCAAGATGGAGCTGCAATAACGAACCTGGAACTTGTCTTACAACCCAACTTGGCAGTCAGCTGAACATAACTTGCTCAAACAATGGGAAATCCAATACATATTTGATTCAAGATCCAACCGATTCACAGATCCAGCAGCTGTGCACTCAGCTTTGCGCTTGA 1170 0.4521 MAAEPPSPTEVHLRINSRKNDNVIHPAEAGVALPYSTTRTPVEYTEVKHFRRWFSWLIPVIVIANIAVFVITMYVNNCPKNSVSCVARFLGRFSFQPLKENPLLGPSSLTLQKMGALDVGRVVHRHQGWRLITCMWLHGGVFHLLANMLGVLIIGIRLEQEFGFLRIGLLFLISGFGGSLLSALFIQSNISVGASGALFGLLGGMLSELITNWSMYDNKFAALFTLVIIVAVNLAVGILPHVDNFAHIGGFITGFLLGFVFLIRPQFGWVSQRYASPDYSSASVRRSKFKKYQCMLWILSLILVIAGITVGLIALLRGVDANDHCSWCHYLSCVPTSRWSCNNEPGTCLTTQLGSQLNITCSNNGKSNTYLIQDPTDSQIQQLCTQLCA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1016 389 PANTHER RHOMBOID-RELATED 38 341 IPR002610 GO:0004252|GO:0006508|GO:0016020
Lele40g1016 389 Pfam Rhomboid family 123 264 IPR022764 GO:0004252|GO:0016020
Lele40g1016 389 FunFam RHOMBOID-like protein 51 264 - -
Lele40g1016 389 Gene3D - 49 264 IPR035952 -
Lele40g1016 389 SUPERFAMILY Rhomboid-like 53 266 IPR035952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1016 Lele-ChrLele40 20523684 20526507 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1191 37 21330000 21333212 Lele40g1016 40 20523684 20526507 hybridization
Lele38g1079 38 22095107 22101661 Lele40g1016 40 20523684 20526507 hybridization