Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01680 ATGGCCGTTCGAGCGGTCACCACCTGCTCCCTCTTCCGTCCTTCCTCTCCGCCTCTCTTCTCCTCCGCCCTCCGCCTCCGCCTCTTCTCCCGCCGCTCCCTCTCTCTCCGCCATGCCGCCACCCTCTCCCACACGCGCTCCATCCACTCCCTCTTTGAGACCGTCTTGGAGGAGCTccgcgccgcgcgcaaacgccgccacgaccgcgtctccgccgccgcTCCCAACAGCATGGGATCGTTGAATGAAGAGCTTGTTGAAGATAGACTTGTGAATCGTTCATTGCAAAAAGGGTTGCTTTTGGAATTCAAGAAGGATTCTGATAGAGTATTGCTAGCAGTAGCTCAGAGACCTGATGGCAAGAAGAACTGGATGGTTTCTGATCAGAATGATGTCACTTCTTCCATCAAACCGCAACAAGTGACATATATTGTTCCTGGTGTTGACAATTTTGACCAAGCAGATATTGCAGATTTTGCTCAGAAGGCTCAGGATAACATGGACCCATCACTACTTGAATTTGCTTGGATTGAGCTCCTCGAGAAGAATAAGTCTGTGACAGTTGAAGAGTTGGCTGAGATAATTTTTGGCAGTGCTGAGCCCCTTGAGAGCTATTCTGCTCATCTCTTGCTATCAAAAGATGAAGTATACTTTACTGTACTGGAGACTAAAGGATGCCGCTCCATTTATGGTCCTCGACCAAGTGGGCAGGTTGAGGAGCTCATTCGTAGGAAGCTTGCAAAGGAGGCCGCTGAGAAAGAACTAAAGGAGTTTATTGAATTACTGACCTCTGCAAAGTCAATGTCTTCACAAGATAAACCTCCAAAATCTTCATGGACAATTGATGAGAAAATTTGGAACAGAATCGAGTCACTTGAAGCATATGCTATTGATACATGTAAAAATGACGAACAAAGGAAAACAGCTGGGATGATACTTAAGGAAATGGGTCTGGCAAAAGTAGCATCTTCAGCTGTTAAACTTTTGATAGATATCGGATATTTTCCTGTACATATCAATCTTGATCTGTTGAAGTTGGGAATTCCCACTTATCATTCAGAAGAAATCATATCGGCTGCTCAAAGTCTTTTATTGGACTCATCTGATCCAGATGAGATTGATAGGAAGAATCTTACTGATTTAAAGGTCTATGCCATTGATGTTGATGAGGCTGATGAGCTTGATGATGCTTTGAGTGCAACAAAGTTGCAAGATGGCCGGATTAAAGTGTGGATACATGTCGCAGACCCAACTAGATATGTTCAACCTGGAAGTATTGTGGACAGGGAGGCTATGAGAAGAGGAACTTCTGTTTTCTTGCCCACTGCTACGTATTCTATGTTTCCAGAAAATCTTGCCATGGGGGGCATGAGTTTGAGACAAGGAGAGCTTTGTAATGCTGTTACTGTATCAGTTGTGCTGCATAATGATGGCAGCATTGCAGAATATTCAGTGTTTAACTCAGTGATTAAACCAACATACATGTTGACATATGAGAGTGCATCTGAACTACTCCATTTGAACCTTCAGGAGGAGGGTGAACTTAGAATTTTATCTGAGGCTGCAAACCTTCGATCAAATTGGCGCCGTCAGCAGGGTGCAATTGAGACAGCAACATTAGATACCCGCTTTAAAGTGTCCAATCCAGAGGATCCAGAGCCATCGATAAAGCTTTATGTGGAAAACCAGGCAGACCCTGCTATGCGATTAGTCTCTGAGATGATGATACTATGTGGTGAAGCTATTGCCACATTCGGGTCTCGGAATGACATTCCTTTACCATACAGGGGACAGCCCCAATCAGATATGAATGTTTCTGAATTTTCCCATCTTCCAGAAGGACCCGTTAGGAGCTTTGCACTGGTAAGAATAATGCGTGCTGCGGAAATTGATTTCAGGAAGCCTGCACGCCATGGTGTTTTGGGGATTCCTGGCTACGTTCAGTTTACATCTCCCATCCGTAGATATTTGGATCTTCTTGCTCATTATCAGAATCAGGAAAATGAAACTAAATGGAAATATATCATGATACATGTTCCCTTCACCGAGGGACAGGATGCAGACTGTGCAACACTGTAG 2079 0.4319 MAVRAVTTCSLFRPSSPPLFSSALRLRLFSRRSLSLRHAATLSHTRSIHSLFETVLEELRAARKRRHDRVSAAAPNSMGSLNEELVEDRLVNRSLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVSDQNDVTSSIKPQQVTYIVPGVDNFDQADIADFAQKAQDNMDPSLLEFAWIELLEKNKSVTVEELAEIIFGSAEPLESYSAHLLLSKDEVYFTVLETKGCRSIYGPRPSGQVEELIRRKLAKEAAEKELKEFIELLTSAKSMSSQDKPPKSSWTIDEKIWNRIESLEAYAIDTCKNDEQRKTAGMILKEMGLAKVASSAVKLLIDIGYFPVHINLDLLKLGIPTYHSEEIISAAQSLLLDSSDPDEIDRKNLTDLKVYAIDVDEADELDDALSATKLQDGRIKVWIHVADPTRYVQPGSIVDREAMRRGTSVFLPTATYSMFPENLAMGGMSLRQGELCNAVTVSVVLHNDGSIAEYSVFNSVIKPTYMLTYESASELLHLNLQEEGELRILSEAANLRSNWRRQQGAIETATLDTRFKVSNPEDPEPSIKLYVENQADPAMRLVSEMMILCGEAIATFGSRNDIPLPYRGQPQSDMNVSEFSHLPEGPVRSFALVRIMRAAEIDFRKPARHGVLGIPGYVQFTSPIRRYLDLLAHYQNQENETKWKYIMIHVPFTEGQDADCATL 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01680 692 Coils Coil 248 268 - -
Cca01g01680 692 SUPERFAMILY Nucleic acid-binding proteins 325 664 IPR012340 -
Cca01g01680 692 Pfam RNB domain 375 664 IPR001900 GO:0003723|GO:0004540
Cca01g01680 692 PANTHER EXORIBONUCLEASE II, MITOCHONDRIAL 46 664 - -
Cca01g01680 692 PANTHER RIBONUCLEASE 46 664 - -
Cca01g01680 692 SMART RNB_2 375 671 IPR001900 GO:0003723|GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01680 Cca-Chr1 38512246 38526113 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01680 K01147 - gmx:100803243 1112.83