Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01153 ATGGCCTTACGGGCAGTTGCCACCTGCTCCCTCTTCCGCCCTCCCTCTCCGCCCCTCTTACCCTCCGCCCTCCGCCTCTTCTCCTCTCCCTTCCGCTGCTCCTGCTCCCTCCGTCATGGCGCCAAAACCTACCACCGCTCCTTCCACTCTCTCTTCGACAGCGTCATGGAAGAGCTCCGTGCGGCTCGCAGAAGCCGCCACAAGCGTGTCTCCGCCGCGGGTTCCAGCACGGGATTGTTGAATGACGAGCTTGTTGAAGATAGACTTGTAAACCGTTCATTGCAGAAAGGGTTGCTTTTGGAATTCAAGAAGGATTCTGATAGAGTATTGCTAGCAGTAGCTCAAAGACCTGATGGCAAGAAGAACTGGATGGTTTCTGATCAGAATGGTGTCACTTCTTCCATCAAACTGCAGCAAGTGACATATATTGTTCCTGGTATTGATAATTTTGACCAAGCAGATATCACAGATTTTGCTCTAAAGGCTCAGGATAACATGGACCCGTCTCTACTTGAATATGCTTGGGTTGAGCTCCTAGAAAAGAATAAGTCTGTCACAGTTGAAGAGTTGGCCGAGATAATTTTTGGCAGCACCGAGCCCCTTGACAGCTATTCTGCTCATCTCTTGCTATCAAAAGATGAAGTATACTTTACTGTATTGGAGACTAAAGGATCTCGTTCCATTTACGGACCTCGACCAAGTAGGCAGGTTGAGGAGCTCATTCACAGGAAGCTTGCAAAGGAGGCTGCTGAGAAAGAATTTTTAGAGTTTATTGAATTACTGGCCTCTGTGAAGTCCATGTCTTTACAAGATAAACCTCCAAAATCTTCCTGGACCAATGATGAGAAAAATTGGAGGAGAATTGAGTCACTTGTAGCATATGCTATTGATTCATGTAAAAGTGATGAACAAAGAAAAACAGCTGGGATGATACTGAAGGAATTGGGTCTGGCAAAGACAAGTTCCTCAGCCGTTAAACTTCTGATAGATATTGGATATTTTCCTGTACATATCAATCTTGATCTGTTGAGATCCGGAATTCCCACCGATCATTCAGAAGAAATCATATCTGCTGCACAGTGTCTTTTATTGGACACATCTGATCCAGACAAGATTGACAGGAAGAATCTTACTGATTTAAAGGTCTATGCCATTGATGTTGATGAGGCTGATGAGCTTGATGATGCTTTGAGTGCAACAAAGTTGCTAGATGGCCGGATTCAAGTTTGGATACATGTTGCAGATCCAACTAGATATGTTCAACCTGGAAGTATAGTGGACAGAGAGGCTATGAGAAGAGGAACTTCTGTTTTCTTGCCCACTGCTACATATTCTATGTTTCCAGAAAATCTTGCCATGGGGGGCATGAGTTTGCGACAAGGAGAGCTTTGTAATGCTGTTACTGTATCAGTTGTGCTGCATAATGATGGCAGCATTGCAGAATATTCAGTTTTTAACTCAGTGATTAAACCAACATACATGCTGACATATGAGAGTGCATCCGAGCTACTCCATTTGAATCTTCAGGAGGAGGGTGAGCTCAGAGTTTTGTCTGAGGCTGCAAACCTTAGGTCAAATTGGCGTCGTCAACAGGGTGCAATTGAGACGTCAACTTTAGATACTCGGATTAAAGTATTTAATCCAGAGGATCCAGAGCCATCATTAAAACTTTATGTGGAAAACCAGGCAGATCCTGCCATGCGTTTAGTCTTTGAGATGATGATACTCTGTGGAGAAGCTATTGCCATGTTTGGATCTCAGAATGACATTCCCTTACCATACAGGGGACAGCCGCAATCAGATATAAATGTTTCCGAATTTTCCCATCTTCCAGAAGGACCTGTTAGGAGCTTTGCACTAGTCAAGGTAATGCGTGCGGCTGAAATTGATTTTAGGAAGCCAGCACGCCATGGTGTTTTGGGGATTCCTGGTTATGTTCAGTTTACATCTCCCATCCGTAGATATTTGGATCTTCTTGCACATTATCAATTCTGTTCTGGTTATTTGCCATTGTCTCGTTGGTGGCCCACTGTTGGGCGGTCTTCCTATGCTGTGTTGGTGTTGCGCCACTATTGTGCTGTTGCTACGCTCCTAAGTGTAGGATTAGGAGTAAAGGCATTCCTTAGAGGCGAGCTTCCACCCTTTACAGCTGGTAAGCTTGAAGGGATAGCAGCTGTTATCAATGAGAATGTTAGAACAGTGAGAAAACTCTGCAACAGTAGTCTTCGATACTGGATATTAGAATATTTACGAAGACAACCAAAAGAGAAACCGTATCGTGCATTGGTTCTTAGATTTTTGAAAGATCGAATTGCAGCTCTATTGCTGGTGGAGGTTGGATTTCAAGCTTCTGCCTGGGTCTCTATTGGATCACAGATAGGGGATGAGGTATTAGTTAAAGTGGAAGAAGCGCATCCGCGTGATGATATTCTTTTTCTGAAGGAGGTTGTAAAAGAGTGA 2460 0.4423 MALRAVATCSLFRPPSPPLLPSALRLFSSPFRCSCSLRHGAKTYHRSFHSLFDSVMEELRAARRSRHKRVSAAGSSTGLLNDELVEDRLVNRSLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVSDQNGVTSSIKLQQVTYIVPGIDNFDQADITDFALKAQDNMDPSLLEYAWVELLEKNKSVTVEELAEIIFGSTEPLDSYSAHLLLSKDEVYFTVLETKGSRSIYGPRPSRQVEELIHRKLAKEAAEKEFLEFIELLASVKSMSLQDKPPKSSWTNDEKNWRRIESLVAYAIDSCKSDEQRKTAGMILKELGLAKTSSSAVKLLIDIGYFPVHINLDLLRSGIPTDHSEEIISAAQCLLLDTSDPDKIDRKNLTDLKVYAIDVDEADELDDALSATKLLDGRIQVWIHVADPTRYVQPGSIVDREAMRRGTSVFLPTATYSMFPENLAMGGMSLRQGELCNAVTVSVVLHNDGSIAEYSVFNSVIKPTYMLTYESASELLHLNLQEEGELRVLSEAANLRSNWRRQQGAIETSTLDTRIKVFNPEDPEPSLKLYVENQADPAMRLVFEMMILCGEAIAMFGSQNDIPLPYRGQPQSDINVSEFSHLPEGPVRSFALVKVMRAAEIDFRKPARHGVLGIPGYVQFTSPIRRYLDLLAHYQFCSGYLPLSRWWPTVGRSSYAVLVLRHYCAVATLLSVGLGVKAFLRGELPPFTAGKLEGIAAVINENVRTVRKLCNSSLRYWILEYLRRQPKEKPYRALVLRFLKDRIAALLLVEVGFQASAWVSIGSQIGDEVLVKVEEAHPRDDILFLKEVVKE 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01153 819 Pfam RNB domain 374 663 IPR001900 GO:0003723|GO:0004540
Vimu9g01153 819 SUPERFAMILY Nucleic acid-binding proteins 324 753 IPR012340 -
Vimu9g01153 819 PANTHER RIBONUCLEASE 88 815 - -
Vimu9g01153 819 SMART RNB_2 374 670 IPR001900 GO:0003723|GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01153 Vimu-Chr9 19096921 19118695 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01153 K01147 - gmx:100803243 1298.11