Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0110 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0111 . . . . . . . . . . . . . . . . Car06g02626 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa7g5507 . . . . Spst4g01414 . . . . . . . Vimu9g01163 . . Vra9g0968
Pvu10g0112 . . . . . . . . . . . . . . . . . Cca01g01685 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa7g5424 . . . . . Ssu4g2161 . . . . . . . . . Vra9g0969
Pvu10g0113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu4g2163 . . . . . . . . . Vra9g0970
Pvu10g0114 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa7g00549 . . . . . . . . . . . . . . . . . . Spst4g01418 Ssu4g2166 . . . Tsu06g00573 . . Vimu9g01167 . . Vra9g0971
Pvu10g0115 . . . . . . . . . . . . . . . . . Cca01g01687 . . . . . . . . . . . . Lan1g0851 . . Lasa7g00557 . . . . . . . . . . . Phco1g01538 . Psa7g5408 . Pumo7g01240 Rops4g00015 Seca4g10582 . Ssu4g2169 . . . Tsu06g00572 . . . Viun10g00786 . Vra9g0972
Pvu10g0116 . . . . . . . . . . . . . . . . . Cca01g01688 . . . . . . . . . . . . . . . Lasa7g00556 . . . . . . . . . . . Phco1g01539 . Psa7g5406 . Pumo7g01241 Rops4g00017 Seca2g01873 Spst4g01419 Ssu4g2168 . . . . . . Vimu9g01168 . Vivi5g01212 Vra9g0974
Pvu10g0117 . . Adu02g01750 Aed2g1314 Aev02g1703 Ahy12g1801 Ahy2g1549 Aip02g02035 . . Amo02g2206 . Arst2g02291 . . . Car06g02656 Cca01g01357 . Dod07g1385 . . . . . Gso3g0587 . . . . . . . Lasa7g00554 . . . . . Mal7g0602 . Mesa13g04835 . Mtr4g0596 . Phco1g01540 . . . Pumo7g02141 Rops4g00311 . Spst4g01420 . . . . . Vian9g01345 Vifa4g01578 . Viun10g00890 . .
Pvu10g0118 . . Adu02g01746 Aed2g1317 Aev02g1700 Ahy12g1799 Ahy2g1547 Aip02g02032 . . Amo02g2205 . Arst2g02290 Bach6g01058 . Bva02g01398 Car06g02658 . . Dod07g1384 . . . . . . . . . . Lan1g0850 . . Lasa7g00553 . . . . . Mal7g0603 Mepo2g00640 Mesa13g04834 . Mtr4g0597 . . . . . . . . Spst4g01422 . . . Trre7g00624 . . . . . . .
   
Previous Page 2414 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0109 Chr10 1656476 1656838 +
Pvu Pvu10g0110 Chr10 1670970 1671224 -
Pvu Pvu10g0111 Chr10 1672104 1678851 -
Car Car06g02626 Chr06 32571847 32577633 -
Psa Psa7g5507 Chr7 472765379 472770736 +
Spst Spst4g01414 Chr4 52020275 52030278 -
Vimu Vimu9g01163 Chr9 19259562 19260172 -
Vra Vra9g0968 Chr9 11744469 11750233 -
Pvu Pvu10g0112 Chr10 1698607 1701889 +
Cca Cca01g01685 Chr01 38626837 38630224 -
Psa Psa7g5424 Chr7 467927846 467931095 -
Ssu Ssu4g2161 Chr4 49442965 49444603 -
Vra Vra9g0969 Chr9 11779895 11782510 +
Pvu Pvu10g0113 Chr10 1707950 1711111 +
Ssu Ssu4g2163 Chr4 49530059 49531697 -
Vra Vra9g0970 Chr9 11826859 11847238 +
Pvu Pvu10g0114 Chr10 1714160 1715817 +
Lasa Lasa7g00549 Chr7 21329336 21331020 +
Spst Spst4g01418 Chr4 52088745 52091814 -
Ssu Ssu4g2166 Chr4 49695262 49696778 -
Tsu Tsu06g00573 Chr06 4957343 4960162 -
Vimu Vimu9g01167 Chr9 19322261 19323091 -
Vra Vra9g0971 Chr9 11865895 11885447 -
Pvu Pvu10g0115 Chr10 1727714 1730353 -
Cca Cca01g01687 Chr01 38749252 38754732 +
Lan Lan1g0851 Chr1 19318085 19321868 -
Lasa Lasa7g00557 Chr7 22215767 22217624 -
Phco Phco1g01538 Chr1 52271129 52275270 -
Psa Psa7g5408 Chr7 466354689 466358137 -
Pumo Pumo7g01240 Chr7 29365402 29369326 +
Rops Rops4g00015 Chr4 488703 490855 +
Seca Seca4g10582 Chr4 242054984 242059673 +
Ssu Ssu4g2169 Chr4 49748956 49753496 -
Tsu Tsu06g00572 Chr06 4951069 4958521 +
Viun Viun10g00786 Chr10 8856193 8859232 -
Vra Vra9g0972 Chr9 11870397 11873594 +
Pvu Pvu10g0116 Chr10 1736716 1739743 -
Cca Cca01g01688 Chr01 38752349 38767026 -
Lasa Lasa7g00556 Chr7 22182793 22186458 -
Phco Phco1g01539 Chr1 52301881 52320101 -
Psa Psa7g5406 Chr7 466214552 466219711 -
Pumo Pumo7g01241 Chr7 29413966 29416687 -
Rops Rops4g00017 Chr4 527809 532885 -
Seca Seca2g01873 Chr2 38740724 38745365 +
Spst Spst4g01419 Chr4 52093983 52098928 -
Ssu Ssu4g2168 Chr4 49709909 49713630 -
Vimu Vimu9g01168 Chr9 19328585 19332456 -
Vivi Vivi5g01212 Chr5 31649720 31653757 +
Vra Vra9g0974 Chr9 11890277 11896104 -
Pvu Pvu10g0117 Chr10 1743004 1749079 -
Adu Adu02g01750 Chr02 75339184 75341417 -
Aed Aed2g1314 Chr2 12724719 12736934 -
Aev Aev02g1703 Chr02 18725893 18738903 +
Ahy Ahy12g1801 Chr12 96835222 96847743 +
Ahy Ahy2g1549 Chr2 82927420 82935226 +
Aip Aip02g02035 Chr02 87782121 87792722 +
Amo Amo02g2206 Chr02 72524951 72553128 +
Arst Arst2g02291 Chr2 74676428 74683165 +
Car Car06g02656 Chr06 34081038 34097594 +
Cca Cca01g01357 Chr01 26165040 26175343 +
Dod Dod07g1385 Chr07 37579476 37590284 +
Gso Gso3g0587 Chr3 16344270 16350601 +
Lasa Lasa7g00554 Chr7 21693156 21696214 -
Mal Mal7g0602 Chr7 15933935 15940505 +
Mesa Mesa13g04835 Chr13 76653798 76666066 -
Mtr Mtr4g0596 Chr4 7543979 7551743 +
Phco Phco1g01540 Chr1 52329675 52336582 -
Pumo Pumo7g02141 Chr7 59064237 59088237 -
Rops Rops4g00311 Chr4 9455386 9461282 -
Spst Spst4g01420 Chr4 52107361 52118949 -
Vian Vian9g01345 Chr9 28679093 28683200 +
Vifa Vifa4g01578 Chr4 459527461 459535312 +
Viun Viun10g00890 Chr10 12145050 12151445 +
Pvu Pvu10g0118 Chr10 1775498 1778867 -
Adu Adu02g01746 Chr02 75250308 75254311 +
Aed Aed2g1317 Chr2 12781434 12785296 -
Aev Aev02g1700 Chr02 18689360 18692522 +
Ahy Ahy12g1799 Chr12 96776032 96780161 +
Ahy Ahy2g1547 Chr2 82860583 82864590 +
Aip Aip02g02032 Chr02 87730586 87734601 +
Amo Amo02g2205 Chr02 72519048 72523209 +
Arst Arst2g02290 Chr2 74670707 74674585 +
Bach Bach6g01058 Chr6 8728575 8730751 -
Bva Bva02g01398 Chr02 17521433 17524108 +
Car Car06g02658 Chr06 34139365 34141803 -
Dod Dod07g1384 Chr07 37567217 37571196 +
Lan Lan1g0850 Chr1 19311664 19315073 -
Lasa Lasa7g00553 Chr7 21687512 21688782 +
Mal Mal7g0603 Chr7 15950600 15954065 -
Mepo Mepo2g00640 Chr2 7653713 7658559 -
Mesa Mesa13g04834 Chr13 76648607 76652143 +
Mtr Mtr4g0597 Chr4 7555615 7560162 -
Spst Spst4g01422 Chr4 52171786 52174507 +
Trre Trre7g00624 Chr7 3972160 3975227 -
Ssu Ssu4g2169 Chr4 49748956 49753496 -
Cca Cca01g01357 Chr01 26165040 26175343 +
Pumo Pumo7g02141 Chr7 59064237 59088237 -
Rops Rops4g00311 Chr4 9455386 9461282 -
Vian Vian9g01345 Chr9 28679093 28683200 +
Vifa Vifa4g01578 Chr4 459527461 459535312 +
Viun Viun10g00890 Chr10 12145050 12151445 +
Psa Psa7g5424 Chr7 467927846 467931095 -