Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2151 ATGTCAGGAGAGCCACGCCAGCTGGAGATCCACCTGCGCGTCAACTCCAAGAGAGGCAACCACATGGTGCACCCCCTGGCGGTGGAGACAGTGTCTACGTCTGACACGGTTCAGTACCAAAGGGAGGAGGCGAAGCATTACCGCAAGCGGTTCCCTTGGTTGATACCTCTCTTTGTCGTTGCCAACATCGTTATGTTTGTCATCACTATGTATGTCAATAACTGCCCCCATAACTCTGTCTCCTGCATTGCCTCCTTCTTGGGTCGCTTCTCCTTCCAGCCCTTCAAAGAAAACCCCCTCTTGGGCCCTTCATCGTTGACGCTACAGAAGATGGGGGCTCTTGATGTGAGCAGAGTGGTTCATAGACACCAGGGGTGGCGCCTCATCACTTGTATGTGGCTACATGCTGGGGTTTTCCATCTGTTGGCAAATATGTTGGGTATTCTAGTCATTGGAATTCGGCTTGAGCAAGAATTTGGGTTTGTGCTTATTGGACTGCTATTTGTCATATCTGGATTTGGGGGGAGTATGCTTTCTGCTCTTTTCATCCAGTCAAACATTTCTGTCGGTGCTTCTGGTGCACTTTTTGGCTTGCTGGGAGGCATGCTTTCAGAACTCATTACTAACTGGACTATATATGATAACAAGCTAGCTGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTGGGAATTCTCCCACATGTGGACAATTTCGCTCATATTGGAGGCTTTCTTACAGGCTTTCTTCTTGGATTTGTGTTTTTGATACGTCCACAGTTTGGATGGGTTAACCAACGATATGCTCCCCTAAATTATTCTCCAGGACGAGCTAAGCCTAAATTCAAGAAATATCAGTGCATCTTATGGGTCCTCTCCCTGATCCTTCTAGTTGTTGGGCTTTCTGTTGGGCTGGTTGCACTTCTCCGTGGTGTTGATGCAAATGATCACTGCTCCTGGTGCCATTATCTGTCTTGCGTTCCAACTTCGAAATGGAGCTGCCATACAGAGGCAGCATATTGTGAGTCAAACCAGCTTGGCAACCAGCTGAACGTAACATGCTCAAGCAATGGTAAATCTAATACATACTACATGCAAGATCCAACCAGTTCCCAGATCCAACAATTGTGTACTCAGCTTTGTAGTTGA 1158 0.4715 MSGEPRQLEIHLRVNSKRGNHMVHPLAVETVSTSDTVQYQREEAKHYRKRFPWLIPLFVVANIVMFVITMYVNNCPHNSVSCIASFLGRFSFQPFKENPLLGPSSLTLQKMGALDVSRVVHRHQGWRLITCMWLHAGVFHLLANMLGILVIGIRLEQEFGFVLIGLLFVISGFGGSMLSALFIQSNISVGASGALFGLLGGMLSELITNWTIYDNKLAALLTLVIIIVINLAVGILPHVDNFAHIGGFLTGFLLGFVFLIRPQFGWVNQRYAPLNYSPGRAKPKFKKYQCILWVLSLILLVVGLSVGLVALLRGVDANDHCSWCHYLSCVPTSKWSCHTEAAYCESNQLGNQLNVTCSSNGKSNTYYMQDPTSSQIQQLCTQLCS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2151 385 Gene3D - 44 261 IPR035952 -
Ssu4g2151 385 SUPERFAMILY Rhomboid-like 49 263 IPR035952 -
Ssu4g2151 385 PANTHER RHOMBOID-LIKE PROTEIN 4 17 384 - -
Ssu4g2151 385 PANTHER RHOMBOID-RELATED 17 384 IPR002610 GO:0004252|GO:0006508|GO:0016021
Ssu4g2151 385 Pfam Rhomboid family 120 261 IPR022764 GO:0004252|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2151 Ssu-Chr4 48599344 48605492 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2151 - - gmx:100801675 663.299