Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00008 ATGGCCGTTCGAGCAGTTAACACCTGCTCGCTCTTCCGTCCTTCCTATCCACCTCTCTCCTCCGCCGTCCGCTTCTTCTCCCGCCACCACCGTTCCGTCGTGTTCCGCCCTCCGCCTCCCTTCTCCTCCTCCTGTTATGGCGGTCAAACTCAACGGCGCTCCATCCAGAGTCTCTTCGAGAGCGTCATGGAAGAGCTCCAAGCCATGCACAAACGCCGCAAGAGAGTTGTCTCTGCTACCTCTTCTTCCAACATGGGTTTGTTGAATGAAGAGCTTCTTGAAGATAGACTTGTGAACCGTTCATTGCAGAAAGGGTTGCTTTTGGAATTCAAAAAGGATTCTGATAGAATATTGCTAGCAGTTGCTCAGAGACCTGATGGCAAGAAGAACTGGATGGTTTCTGATCAGAATGGTGTCACTTCTTCCATCAAACCGCAACAAGTGACGTATGTTGTTCCTGGTATTGACAATTTCGACCAAGCAGATATCGCAGATTTTGTTCAGAAAGCTCAGGACAACATGGACCCATCATTACTTGAATTTGCTTGGGTTGAGCTCCTTGAAAATAATAAGTCTGTGACAGTTGAAGAGTTGGCTGAGATAATTTTTGGTAGTGCTGAGCCTCTTGAGAGCTATTCTGCTCATCTCTTGCTATCCAAAGATGAAGTGTACTTTACTGTGCTCGAGACTAAAGGATATCGTTCCATTTATGGACCTCGACCAAGTGAGCAGGTGGAGGAGCTTATTCGTAGGAAGCTTGCAAAGGAGGCAGCTGAGAAAGAATTTCACGAGTTTATTAATCTGCTGGTATCTGCAAAATCAATGCTGTCACAAGATAAACCTTCCAAATCTTCATGGATGAATGAGGAGAAAATTTGGAGCAGCATTGAATCACTTGAAGCATATGCTATTGATGCATGTAAAAATGATGAACAAAGGAAAACAGCTGGGATGATATTGAAGGAAATGGGTCTGGCAAAAACAGCATCTTCAGCTGTGAATCTTTTAGTAGATATTGGGTATTTTCCAGTACATGTCAATCTTGATCTGTTGAAGTTGGGAATTCCCACTGATCACTCAGAAGAGATCATATCAGCTGCTCAAAGTCTTCTATCAGACTCATCTGATCCAGATGAGATTAGTAGGAAGAATCTTACCGATTTAAAGGTCTATGCCATTGATGTTGATGAAGCTGATGAGCTTGACGATGCTTTGAGTGCAAAAAAGTTGGAAGATGGTCGGATTAAAATTTGGATACATGTTGCAGACCCAACTAGATATGTTCAACCTGGATGTATTGTGGATAGGGAGGCCATGAGAAGAGGAACTTCTGTTTTCTTGCCCACTGCTACATATGCTATGTTTCCAGAAAAACTTGCCATGGGGGCTATGAGTTTGAGACAAGGAGAGCTTTGTAATGCTGTTACTGTATCAGTTGTGCTGCATGATGATGGCAGCATTGCAGAATGTTCAGTGTTCAACTCGGCGATTAAACCAACATACATGCTGACATATGAGAGCGCATCTGAGCTACTCCATTTGAACCTTCAGGAGGAGGTTGAACTCAAAATTTTGTCAGAGGCTGCAAACCTTCGTTTAAATTGGCGCCGTCGGCAGGGTGCAGTTGAGACAGCGACAATAGAAACTCGTGCTAAAGTGTCTAATCCAGAGGATCCAGAGCCATCAATAAACCTTTATGTGGAAAACCAGGCAGACCCTGCAATGCGATTAGTCTCTGAGATGATGATACTCTGTGGCGAAGCGATAGCCACATTTGGTTCTCGGAATGACATTCCTTTACCGTACCGGGGACAACCCCAATCAGATATAAATCTATCTGAATTTGCCCATCTTCCTGAAGGGCCTGTTAGGAGCTTCGCCCTGGTCAGAGTAATGCGTGCAGCTGAAATTGATTTCAGGAAGCCAGCACGCCATGGGGTTTTGGGAATTCCGGGTTATGTTCAATTTACCTCTCCCATCCGTAGATATTTGGATCTTCTTGCTCATTATCAGGTAAAGGCATTTCTTAGAGGTGAGCCTCCACCGTTTTCAGCTGGTAAGCTTGAAGGGATAGCAGCAGTTGTAAATGAGAAAGTAAGAGCAGCGAGGAAGCTCTGCAGCAGTAGTCTTCGATACTGGATACTAGAATATTTAGGAAGACAACCGAAAGAGAAAAGATATCGTGCATTGGTCCTTAGATTTTTGAAAGATCGAATTGCAGCTCTGCTGTTGGTTGAGGTTGGATTTCAAGCTTCTGCCTGGGTCTCGGTTGGAACTCAGATAGGAGATGAAGTAATGGTTAAGGTGGAAGAAGCACATCCCCGTGATGATATTCTTTTTCTGAAGGAGGTTATAAAAGGGTGA 2364 0.4433 MAVRAVNTCSLFRPSYPPLSSAVRFFSRHHRSVVFRPPPPFSSSCYGGQTQRRSIQSLFESVMEELQAMHKRRKRVVSATSSSNMGLLNEELLEDRLVNRSLQKGLLLEFKKDSDRILLAVAQRPDGKKNWMVSDQNGVTSSIKPQQVTYVVPGIDNFDQADIADFVQKAQDNMDPSLLEFAWVELLENNKSVTVEELAEIIFGSAEPLESYSAHLLLSKDEVYFTVLETKGYRSIYGPRPSEQVEELIRRKLAKEAAEKEFHEFINLLVSAKSMLSQDKPSKSSWMNEEKIWSSIESLEAYAIDACKNDEQRKTAGMILKEMGLAKTASSAVNLLVDIGYFPVHVNLDLLKLGIPTDHSEEIISAAQSLLSDSSDPDEISRKNLTDLKVYAIDVDEADELDDALSAKKLEDGRIKIWIHVADPTRYVQPGCIVDREAMRRGTSVFLPTATYAMFPEKLAMGAMSLRQGELCNAVTVSVVLHDDGSIAECSVFNSAIKPTYMLTYESASELLHLNLQEEVELKILSEAANLRLNWRRRQGAVETATIETRAKVSNPEDPEPSINLYVENQADPAMRLVSEMMILCGEAIATFGSRNDIPLPYRGQPQSDINLSEFAHLPEGPVRSFALVRVMRAAEIDFRKPARHGVLGIPGYVQFTSPIRRYLDLLAHYQVKAFLRGEPPPFSAGKLEGIAAVVNEKVRAARKLCSSSLRYWILEYLGRQPKEKRYRALVLRFLKDRIAALLLVEVGFQASAWVSVGTQIGDEVMVKVEEAHPRDDILFLKEVIKG* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00008 787 Pfam RNB domain 382 677 IPR001900 GO:0003723|GO:0004540
Rops4g00008 787 SMART RNB_2 382 678 IPR001900 GO:0003723|GO:0004540
Rops4g00008 787 PANTHER RIBONUCLEASE 90 783 - -
Rops4g00008 787 SUPERFAMILY Nucleic acid-binding proteins 332 720 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00008 Rops-Chr4 293423 333631 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00008 K01147 - gmx:100803243 1295.41