Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0108 ATGGATCGTACTGACAAGCAGCAGCTATCCTTGGTCAAGGGTACAAGGCAAAGATACAATGAATGGATTTTTCGTGATGTACCAAGTGATATAACAATAGAAGTGAATGGAGGAGCATTTTCATTGCACAAGTTTCCTCTTGTCTCCAGAAGTGGAAGAATAAGGAGGATAGTTGCAGAAAACAGGGATGATGATATCTCAAGAGTTGTGCTTAATAATCTACCAGGAGGTGCTGAATGCTTTGAGCTGGCAGCAAAATTTTGTTATGGTATTAACTTCGAGATTACATCCACAAATGTTGCTCAGCTATGTTGTGTCTCTGATTACCTTGAAATGACTGAAGACTTTTCAAAAGACAACCTCGGCTCGCGTGCTGAGGAATACCTCGAGAGTGTAGTTTGCAAGAATCTTGAAATGTGTGTTGAAGTCTTGCAACAATGTGAGAGCCTGCTTCCTCTTGCTGATGAGCTAAAAGTAGTTATCCGCTGCATTGATGCAATAGCTTCAAAAGCATGTGCAGAACAAATAGCCTCTAGTTTCTCAAGATTAGAGTATAGCAGCTCTGGCAGGTTACACATGAGTAGGCAAGCCAAATGCGATAGTGACTGGTGGATAGAAGATCTTTCTGTTCTCAGAATTGATATGTATCAAAGAGTCATATCAGCCATGAAATGCCGTGGCGTTCGGCCAGAGAGTATTGGTGCTTCCCTTGTGAATTATGCACAGAAAGAACTGACAAAGAAATCCAGCTTGTGGAATCCATCCAGCCAGACCAAGATTGATTCAGAATCCTCTCTGCATGAAAAGCTTGTGGTTGAGACCATTGTCAGCCTTTTGCCTGTGGAGAAACTTGCTGTTCCAATCAATTTCCTTTTCGGGCTTCTGCGAAGTGCAGTGATGCTTGATTGCACAGTTGCTTCTAGACTTGACTTGGAAAGAAGGATTGGATCACAGCTAGATGTTGCCACCCTTGATGATATTTTGATTCCCTCTTTCAGGCATGCAGGTGATACCTTGTTTGATGTTGACACAGTTCATAGAATTTTGGTAAATTTCTTTCAGCAGGATGATAGTGACGAAGACCCAGAAGATGCATCTTTCTTTGAATCTGACAGCCCTCGTTCACCCTCCCAAACTGCACTAGTTAAAGTGTCAAAACTAGTGGACAACTACCTCGCTGAAATTGCCCCAGATGCAAACCTCAAACTTTCCAAGTTTTTGGTCATTGCAGAAACCTTGCCTGCACATGCCCGCACGGTTCATGATGCTCTATATCGGGCAATTGATATTTACTTAAAAGCCCACCAAGGTTTGTCAGATTTGGACAAGAAAAAGCTATGCAGATTGATTGATTTTCAAAAGCTTTCTCAAGAAGCTGGAGCACACGCTGCGCAAAACGAGCGTCTTCCTCTACAATCAATAGTGCAAGTTCTGTATTTTGAACAGCTAAGACTCAGAAATTCTTTGTCCTGCTCCTTTGGGGAAGATGATCCGAAGCCAATACACCAGTCATGGCGCATAAGTAGTGGTGCACTGAGTGCAGCAATGTCTCCCAGAGACAACTATGCATCACTGAGACGCGAAAACCGTGAGCTTAAACTTGAATTGGCTCGACTAAGAATGAGACTGAATGATCTTGAGAGGGAGCATGCTTGCATGAAGAGGGACATGGCTAAGTCTGGATCGCGTAAATTCATGAGTTCTTTCTCCAAAAAAATTGGTAAGCTTAGTCTTTTTGGGCATAGTTCTTCTAGAGGATCAACTTCCCCATCCAAGAATTCTCATAGAACAGATTCAAAGGTGATTGAGAGAACCTGTGCTAGCACAGAGTAG 1833 0.4272 MDRTDKQQLSLVKGTRQRYNEWIFRDVPSDITIEVNGGAFSLHKFPLVSRSGRIRRIVAENRDDDISRVVLNNLPGGAECFELAAKFCYGINFEITSTNVAQLCCVSDYLEMTEDFSKDNLGSRAEEYLESVVCKNLEMCVEVLQQCESLLPLADELKVVIRCIDAIASKACAEQIASSFSRLEYSSSGRLHMSRQAKCDSDWWIEDLSVLRIDMYQRVISAMKCRGVRPESIGASLVNYAQKELTKKSSLWNPSSQTKIDSESSLHEKLVVETIVSLLPVEKLAVPINFLFGLLRSAVMLDCTVASRLDLERRIGSQLDVATLDDILIPSFRHAGDTLFDVDTVHRILVNFFQQDDSDEDPEDASFFESDSPRSPSQTALVKVSKLVDNYLAEIAPDANLKLSKFLVIAETLPAHARTVHDALYRAIDIYLKAHQGLSDLDKKKLCRLIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLRLRNSLSCSFGEDDPKPIHQSWRISSGALSAAMSPRDNYASLRRENRELKLELARLRMRLNDLEREHACMKRDMAKSGSRKFMSSFSKKIGKLSLFGHSSSRGSTSPSKNSHRTDSKVIERTCASTE* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0108 610 ProSiteProfiles NPH3 domain profile. 202 484 IPR027356 -
Pvu10g0108 610 Coils Coil 522 556 - -
Pvu10g0108 610 Pfam NPH3 family 202 459 IPR027356 -
Pvu10g0108 610 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Pvu10g0108 610 SUPERFAMILY POZ domain 16 114 IPR011333 -
Pvu10g0108 610 Pfam BTB/POZ domain 28 114 IPR000210 GO:0005515
Pvu10g0108 610 MobiDBLite consensus disorder prediction 580 595 - -
Pvu10g0108 610 MobiDBLite consensus disorder prediction 578 610 - -
Pvu10g0108 610 MobiDBLite consensus disorder prediction 357 376 - -
Pvu10g0108 610 PANTHER OS12G0117600 PROTEIN 16 597 IPR043454 -
Pvu10g0108 610 Gene3D Potassium Channel Kv1.1; Chain A 10 130 IPR011333 -
Pvu10g0108 610 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 16 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0108 Pvu-Chr10 1648750 1652524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0108 20 559 EF-hand Containing Proteins AT3G44820 35.839 2.80e-114 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0108 - - gmx:100799524 1094.34