Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0222 ATGCAAATCGCGTTCGGTGGGAAAAGCAGAGCGATTGATTATTTTGCCTCAACATACTCACTGATCGCAGTTTCTTGTCTTCGTTTAGCTTCACCGAGTTCATTGTCCATGGCGGCAGAGCCAACTCCACCGTCGGAGATCCAACTGAGGATCAATTCTCGGAAGAACGACAATGTGATACACCCAGTGGAGGCAGGCGCGGATCTACCGTATTCAACAACTAGAACGCCAGTAGAATACACCGAAGTAAAGCATCTCAATAGATGGTTTTCCTGGCTAATTCCTGTCATTGTTATTGCCAACATAGCTGTGTTCGTAATTACCATGTACGTCAACAATTGCCCCAAAAATTCTGTCTCTTGCGTTGCCCGCTTCCTCGGTCGTTTCTCCTTTCAGCCGCTCAAAGAGAACCCTCTTCTCGGGCCTTCTTCATTAACGCTACAGAAGATGGGAGCTCTTGATGTAGCTAGAGTGGTTCACAGACACCAGGGCTGGCGCCTTATCACTTGCATGTGGTTACATGGTGGTGTCTTCCATCTATTGGCAAATATGTTGGGTATTCTGATCATTGGGATCCGGCTTGAGCAAGAATTTGGATTCTTGCGTATTGGATTGCTATTTGTGATTTCTGGATTTGGGGGAAGTTTGCTTTCTGGTCTATTCATTCAGTCAAACATCTCTGTGGGTGCCTCTGGTGCTCTTTTTGGATTGCTGGGAGGCATGCTCTCTGAACTTATTACTAATTGGTCTATGTATGATAACAAGTTTGCAGCACTCTTCACTCTTGTGATTATCGTTGCAGTCAATCTAGCTGTAGGGATCCTCCCACATGTGGACAATTTTGCCCATATTGGAGGATTTATTACGGGATTTCTTCTTGGATTTGTGTTTCTGATCCGTCCTCAGTTTGGCTGGGTTAACCAAAGATATGCTTCTGCCTCAGTTAGAAGATCTAAGTTCAAAAAATACCAGTGTATCTTATGGATCCTCTCTCTGATCCTTGTCATTGCTGGAATTACTGCTGGCCTTATTGCGCTTCTCCGTGGTGTTGATGCCAATGATCATTGTTCTTGGTGCCATTATCTATCTTGTGTCCCAACTTCAAGATGGAGCTGCAATAACGAACCTGGATCTTGTCTTACATCCCAACTTGGCAGTCAGCTGAACATAACTTGCTCAAACAATGGGAAATCCAATACATATTTGATTCAAGATCCAACCGATTCACAGATCCAGCAGCTGTGCACTCAGCTTTGCGCTTGA 1263 0.4473 MQIAFGGKSRAIDYFASTYSLIAVSCLRLASPSSLSMAAEPTPPSEIQLRINSRKNDNVIHPVEAGADLPYSTTRTPVEYTEVKHLNRWFSWLIPVIVIANIAVFVITMYVNNCPKNSVSCVARFLGRFSFQPLKENPLLGPSSLTLQKMGALDVARVVHRHQGWRLITCMWLHGGVFHLLANMLGILIIGIRLEQEFGFLRIGLLFVISGFGGSLLSGLFIQSNISVGASGALFGLLGGMLSELITNWSMYDNKFAALFTLVIIVAVNLAVGILPHVDNFAHIGGFITGFLLGFVFLIRPQFGWVNQRYASASVRRSKFKKYQCILWILSLILVIAGITAGLIALLRGVDANDHCSWCHYLSCVPTSRWSCNNEPGSCLTSQLGSQLNITCSNNGKSNTYLIQDPTDSQIQQLCTQLCA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0222 420 PANTHER RHOMBOID-RELATED 79 372 IPR002610 GO:0004252|GO:0006508|GO:0016020
Lele39g0222 420 Pfam Rhomboid family 159 300 IPR022764 GO:0004252|GO:0016020
Lele39g0222 420 Gene3D - 87 300 IPR035952 -
Lele39g0222 420 SUPERFAMILY Rhomboid-like 90 302 IPR035952 -
Lele39g0222 420 FunFam RHOMBOID-like protein 87 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0222 Lele-ChrLele39 1470996 1474391 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1191 37 21330000 21333212 Lele39g0222 39 1470996 1474391 hybridization
Lele38g1079 38 22095107 22101661 Lele39g0222 39 1470996 1474391 hybridization