Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1079 ATGGGGCCTTCCTCGTTAGCCTTGGCCGGCATCGCATTGGCCATGCTTTATTTCGCCTCAACATACTCCCCGATCGAAGTTTCTCGTCTTCATTTAGCATCACCGAGTTCATTGTCCATGGCGGCAGAGCCACCTTCACCGTCGGAGGTCCACCTGAGGATTAATTCTCGGAAGAACGACAATGCGATACACCCAGCGGAGACAGGCGTGGCTCTGCCTTATTCAACAACTAGAACGCCGGTAGAATACACCGAAGTAAAGCATTCCAAGAGATGGTTTTCCTGGCTAATTCCTGTCATTGTTATTGCCAACATCGCTGTGTTCGTAATTACCATGTACGTCAACAATTGCCCCAAAAACTCTGTCTCTTGTGTTGCCCGCTTCCTCGGTCGTTTCTCCTTTCAGCCGCTCAAAGAGAACCCTCTTCTCGGGCCCTCTTCATTAACGCTACAGAAGATGGGAGCTCTTGATGTAGGTAGGGTGGTTCATAGACACCAGGGCTGGCGCCTTATCACTTGCATGTGGTTACATGGTGGTGTCTTCCATCTATTGGCAAATATGTTGGGTGTTCTGATAATTGGGATCCGGCTTGAGCAAGAATTTGGATTCTTGCGTATTGGATTGCTATTTTTGATTTCTGGATTTGGGGGAAGTTTGCTTTCTGCTCTATTCATCCAGTCAAACATCTCTGTGGGTGCCTCTGGAGCTCTTTTTGGATTGCTGGGAGGCATGCTTTCTGAACTCATTACTAATTGGTCTATGTATGATAACAAGTTTGCAGCACTCTTCACTCTTGTGATTATCGTTGCAGTCAATCTAGCGGTAGGGATCCTCCCACATGTGGACAATTTTGCTCATATTGGAGGATTTATTGCAGGATTTCTTCTTGGATTTGTGTTTCTGATCCGTCCTCAGTTTGGCTGGGTTAACCAAAGATATGCTTCTCCAGATTACTCTTCTGCCTCAGTTAGAAGATCTAAGTTCAAAAAATACCAGTGCATCTTATGGATCCTCTCTCTGATCCTTGTCATTGCTGGAATTACTGTTGGCCTTATTGCACTTCTCCGTGGTGTCGATGCCAATGATCATTGTTCTTGGTGCCATTATCTATCTTGTGTCCCAACTTCAAGATGGAGCTGCAATAACGAACCTGGAACTTGTCTTACGACCCAACTTGGCGGTCAGCTGAACATAACTTGCTCAAACAATGGGAAATCCAATACATATTTGATTCAAGATCCAACAGATTCACAGATCCAGCAGTTGTGCACTCAGCTTTGCGCTTGA 1287 0.4577 MGPSSLALAGIALAMLYFASTYSPIEVSRLHLASPSSLSMAAEPPSPSEVHLRINSRKNDNAIHPAETGVALPYSTTRTPVEYTEVKHSKRWFSWLIPVIVIANIAVFVITMYVNNCPKNSVSCVARFLGRFSFQPLKENPLLGPSSLTLQKMGALDVGRVVHRHQGWRLITCMWLHGGVFHLLANMLGVLIIGIRLEQEFGFLRIGLLFLISGFGGSLLSALFIQSNISVGASGALFGLLGGMLSELITNWSMYDNKFAALFTLVIIVAVNLAVGILPHVDNFAHIGGFIAGFLLGFVFLIRPQFGWVNQRYASPDYSSASVRRSKFKKYQCILWILSLILVIAGITVGLIALLRGVDANDHCSWCHYLSCVPTSRWSCNNEPGTCLTTQLGGQLNITCSNNGKSNTYLIQDPTDSQIQQLCTQLCA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1079 428 Pfam Rhomboid family 162 303 IPR022764 GO:0004252|GO:0016020
Lele38g1079 428 Gene3D - 90 303 IPR035952 -
Lele38g1079 428 SUPERFAMILY Rhomboid-like 92 305 IPR035952 -
Lele38g1079 428 FunFam RHOMBOID-like protein 90 303 - -
Lele38g1079 428 PANTHER RHOMBOID-RELATED 55 380 IPR002610 GO:0004252|GO:0006508|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1079 Lele-ChrLele38 22095107 22101661 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g1079 38 22095107 22101661 Lele39g0222 39 1470996 1474391 hybridization
Lele38g1079 38 22095107 22101661 Lele40g1016 40 20523684 20526507 hybridization