Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0200 Acco01g3247 . . . Adu08g02053 . Aed1g0568 . Aev10g1336 . Ahy18g1405 . Aip08g01499 . . . Amo18g1663 . Apr2g0424 . Arst8g02828 . . . . . . Bva07g01714 Car01g02015 . Cca10g01137 . . . Dod10g0960 . Enph3g0946 . . . . . Gma12g02130 Gma13g02425 . . . . . . . Lal20g0349 . Lal11g1445 . . . . . . . . . . . . . . . . . . . Lja3g4853 Mal4g1480 . Mepo6g03058 . Mesa5g01509 . . . Mtr2g2594 . Phac5g00976 . Phco10g00721 . Prci7g1854 . Psa5g5545 . Pste3g02315 . . . . . . . Pvu5g0720 . . . . . . . Ssu8g1179 . Sto7g0222 . Tpr7g3498 . . . Tsu02g04345 . . . . . . . . . . . Vra5g2839 .
Vvi19g0201 . . . . . Adu03g01811 . . . . . . . . . . . . . Apr5g0139 . Arst3g02394 . . . . . Bva07g01715 . . . . . . . . . . . . . . . . . . . . . . . . Lal1g0583 . . . . . . . . . . Lasa4g01397 . . . . . . . . . Lja3g4852 . . . . . . . . . . . . . Phco9g01756 . . . . . . . . . Pte17g00395 . . . Pvu11g1625 . . . . . . . . . . . . . . . . . . . . . Vimu5g00545 . . . . . .
Vvi19g0202 Acco01g3249 . Accr1g02925 . Adu08g02052 . Aed1g0569 . Aev10g1337 . Ahy18g1404 . Aip08g01498 . Alju02g0779 . . . Apr2g0423 . Arst8g02826 . . . Bisa12g0544 . . Bva07g01716 Car01g02016 . Cca10g01133 . Dere08g0398 . Dod10g0961 . Enph3g0948 . Glsi14g1016 . . . . Gma13g02426 . . . . . . . Lal20g0348 . . . . . . . . . . . . Lele09g0644 Lele10g0592 Lele11g0659 . . . . . . . Mal4g1479 . . . . . Mibi01g0684 . Mtr2g2595 . . . . . Prci7g1856 . . . . . . . . . Pumo4g03406 . Pvu5g0777 . Rops7g01278 . Seca4g06186 . . . Ssu8g1177 . Sto7g0223 . Tpr7g3499 . . . Tsu02g04346 . Vian11g01061 . Vifa1g03075 . . . Viun5g02564 . Vivi3g02308 . Vra5g2840 .
Vvi19g0203 . . . . . . . . . . . . . . . . . . . Apr5g0138 . . . . . . Bva09g00891 Bva07g01717 . . . . . . . . . . . . . Gma12g01475 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0204 . . . . . . . . . . . . . . . . . . Apr2g0421 . . . . . . . . Bva07g01718 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0205 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0208 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0209 . . . . Adu08g02041 . . . . . . . . . . . . . . . Arst8g02815 . . . . . . Bva07g01720 . . . . . . . . . . . . . . Gma12g02126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g3772 . . . . . . . . . . . . . . . . . Psa5g5552 . . . . . . . Pumo4g03419 . Pvu5g0769 . Rops7g01288 . Seca4g06172 . . . . . . Sto4g2826 . . . . . . Vian11g01047 . Vifa1g03034 . Vimu4g01408 . Viun5g02583 . Vivi2g06214 . . .
   
Previous Page 2693 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Gma Gma12g01475 Chr12 28279685 28280293 +
Vvi Vvi19g0200 Chr19 2237461 2251081 -
Acco Acco01g3247 Chr01 49760897 49768570 -
Adu Adu08g02053 Chr08 34338997 34346404 +
Aed Aed1g0568 Chr1 7191705 7200768 -
Aev Aev10g1336 Chr10 16862086 16869461 -
Ahy Ahy18g1405 Chr18 26822325 26829964 +
Aip Aip08g01499 Chr08 25539399 25546842 +
Amo Amo18g1663 Chr18 33551131 33558649 -
Apr Apr2g0424 Chr2 4956415 4965343 +
Arst Arst8g02828 Chr8 38705615 38713200 +
Bva Bva07g01714 Chr07 15991493 15999742 -
Car Car01g02015 Chr01 45391418 45398343 -
Cca Cca10g01137 Chr10 14516102 14524683 +
Dod Dod10g0960 Chr10 27548806 27557143 -
Enph Enph3g0946 Chr3 30770786 30781151 -
Gma Gma12g02130 Chr12 42159749 42167320 +
Gma Gma13g02425 Chr13 38998719 39006095 -
Lal Lal20g0349 Chr20 2809173 2816751 +
Lal Lal11g1445 Chr11 17804750 17812571 +
Lja Lja3g4853 Chr3 90586181 90594579 +
Mal Mal4g1480 Chr4 22637562 22646664 +
Mepo Mepo6g03058 Chr6 42197668 42206378 -
Mesa Mesa5g01509 Chr5 21957477 21965952 +
Mtr Mtr2g2594 Chr2 38907645 38916773 -
Phac Phac5g00976 Chr5 11194374 11202046 -
Phco Phco10g00721 Chr10 8769587 8776561 -
Prci Prci7g1854 Chr7 33236306 33246404 -
Psa Psa5g5545 Chr5 481549568 481558404 -
Pste Pste3g02315 Chr3 16370776 16378407 -
Pvu Pvu5g0720 Chr5 11218953 11226509 -
Ssu Ssu8g1179 Chr8 21046437 21053636 +
Sto Sto7g0222 Chr7 1577743 1587046 -
Tpr Tpr7g3498 Chr7 43464107 43474505 -
Tsu Tsu02g04345 Chr02 52025174 52034920 -
Vra Vra5g2839 Chr5 36297649 36305226 -
Vvi Vvi19g0201 Chr19 2252925 2257899 -
Adu Adu03g01811 Chr03 31156298 31160966 -
Apr Apr5g0139 Chr5 1229073 1233180 +
Arst Arst3g02394 Chr3 31493223 31497997 -
Bva Bva07g01715 Chr07 16000908 16004582 -
Lal Lal1g0583 Chr1 3734593 3739219 +
Lasa Lasa4g01397 Chr4 142395224 142398008 -
Lja Lja3g4852 Chr3 90581397 90584625 +
Phco Phco9g01756 Chr9 41425531 41429508 +
Pte Pte17g00395 Chr17 5124165 5128743 +
Pvu Pvu11g1625 Chr11 41277965 41281021 +
Vimu Vimu5g00545 Chr5 5768292 5771678 +
Vvi Vvi19g0202 Chr19 2259642 2270889 -
Acco Acco01g3249 Chr01 49774599 49780416 -
Accr Accr1g02925 Chr1 66111968 66112429 -
Adu Adu08g02052 Chr08 34333724 34336759 +
Aed Aed1g0569 Chr1 7202172 7206834 -
Aev Aev10g1337 Chr10 16872902 16875847 -
Ahy Ahy18g1404 Chr18 26815236 26819315 +
Aip Aip08g01498 Chr08 25526005 25528798 +
Alju Alju02g0779 Chr02 5750451 5754047 +
Apr Apr2g0423 Chr2 4948581 4952788 +
Arst Arst8g02826 Chr8 38700307 38703551 +
Bisa Bisa12g0544 Chr12 8034290 8034628 -
Bva Bva07g01716 Chr07 16004834 16008589 -
Car Car01g02016 Chr01 45402921 45406440 -
Cca Cca10g01133 Chr10 14418668 14425140 +
Dere Dere08g0398 Chr08 6480318 6480800 -
Dod Dod10g0961 Chr10 27565742 27569340 -
Enph Enph3g0948 Chr3 30787454 30791555 -
Glsi Glsi14g1016 Chr14 11354808 11355308 -
Gma Gma13g02426 Chr13 39010159 39014260 -
Lal Lal20g0348 Chr20 2804863 2808609 +
Lele Lele09g0644 Chr09 4925735 4926199 -
Lele Lele10g0592 Chr10 4354015 4357343 -
Lele Lele11g0659 Chr11 6325734 6326051 -
Mal Mal4g1479 Chr4 22621863 22631749 +
Mibi Mibi01g0684 Chr01 6534734 6539525 +
Mtr Mtr2g2595 Chr2 38918837 38925725 -
Prci Prci7g1856 Chr7 33248029 33251983 -
Pumo Pumo4g03406 Chr4 71660092 71664175 -
Pvu Pvu5g0777 Chr5 13545448 13550041 +
Rops Rops7g01278 Chr7 17328803 17342479 -
Seca Seca4g06186 Chr4 121860576 121865181 +
Ssu Ssu8g1177 Chr8 21021900 21034501 +
Sto Sto7g0223 Chr7 1589524 1598753 -
Tpr Tpr7g3499 Chr7 43478163 43483994 -
Tsu Tsu02g04346 Chr02 52037678 52043317 -
Vian Vian11g01061 Chr11 14919698 14924106 +
Vifa Vifa1g03075 Chr1 481131470 481139432 +
Viun Viun5g02564 Chr5 36777465 36780762 -
Vivi Vivi3g02308 Chr3 38461035 38464905 -
Vra Vra5g2840 Chr5 36307322 36311801 -
Vvi Vvi19g0203 Chr19 2271567 2272052 -
Apr Apr5g0138 Chr5 1226637 1227197 +
Bva Bva09g00891 Chr09 4611433 4611954 +
Bva Bva07g01717 Chr07 16008734 16009389 -
Gma Gma12g01475 Chr12 28279685 28280293 +
Vvi Vvi19g0204 Chr19 2280009 2280765 -
Apr Apr2g0421 Chr2 4943800 4944690 +
Bva Bva07g01718 Chr07 16010537 16010905 -
Vvi Vvi19g0205 Chr19 2290502 2291355 -
Vvi Vvi19g0206 Chr19 2291819 2293513 -
Vvi Vvi19g0207 Chr19 2296057 2296629 +
Vvi Vvi19g0208 Chr19 2297446 2302773 +
Vvi Vvi19g0209 Chr19 2304680 2306664 -
Adu Adu08g02041 Chr08 34149193 34151873 -
Arst Arst8g02815 Chr8 38537265 38539852 -
Bva Bva07g01720 Chr07 16017234 16022434 -
Gma Gma12g02126 Chr12 42084450 42087514 -
Lja Lja3g3772 Chr3 74397141 74399907 -
Psa Psa5g5552 Chr5 483671973 483674210 +
Pumo Pumo4g03419 Chr4 71784056 71786846 +
Pvu Pvu5g0769 Chr5 13133541 13136204 -
Rops Rops7g01288 Chr7 17474673 17478138 +
Seca Seca4g06172 Chr4 121158219 121161277 -
Sto Sto4g2826 Chr4 29047589 29057790 -
Vian Vian11g01047 Chr11 14498873 14501334 -
Vifa Vifa1g03034 Chr1 475380599 475382089 -
Vimu Vimu4g01408 Chr4 14656805 14660988 -
Viun Viun5g02583 Chr5 37000733 37003474 +
Vivi Vivi2g06214 Chr2 196574468 196576434 -