Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1404 ATGGCTTCATCCTCGCACGGCGACCAAATGAGGATCGTGGCGACCCAGTTCTGTTCTGATGATCAGACTCTCATTGCTCATATACGAAAGACTATGACTATAATGAAGGAGATTGCAGTTGAATTCGAGAAACACAACGAATCTGATAAGGTGAAGGAGTTGGAAGAGGCTGTTTTGGAGTTAGCTGATCTCTCTGAGGATAGTGTGCATCTTTCATCAGCAGTTCAAGCTATTGCAAACGGATACCAGCCAAAAGAAGAGGTTGTGAATAATTTTCGTAAGTTACTTGAGGATGAAGTGTCAAAATTGAAGGGCCAGTATACTACTTCAGATCCTAATAGTAATCCTTTGGTTCGCCAATTTAAGGAAGCTGTATGGAAAGTTCATCATGAAGGGCAGCCAATGCCAGGAGAAGAGCAGGAGGACATTGTAATGACAAGTACCCAATCCAGTATTTTGAATATGACTTGCCCATTGACTGGAAAACCTGTTACTGAGCTTGAAGAACCAGTTCGCAGTGTGGAATGCAAGCATATTTATGAAAAGAGAATAATAATGCAATATATAAAGTCATCCAATCGATGTCCAATATCAGGTTGCCCGAAGAAATTGCGTGCAGATAGGGTGGTGCAGGATGCCTTGTTACTGATTGAGATTGAGGAATTGCGCAAAGTGAACAAAGAAACTGAAGTGGAAGACTTTACTCTCCTTAATGAAGACGATTGA 726 0.4146 MASSSHGDQMRIVATQFCSDDQTLIAHIRKTMTIMKEIAVEFEKHNESDKVKELEEAVLELADLSEDSVHLSSAVQAIANGYQPKEEVVNNFRKLLEDEVSKLKGQYTTSDPNSNPLVRQFKEAVWKVHHEGQPMPGEEQEDIVMTSTQSSILNMTCPLTGKPVTELEEPVRSVECKHIYEKRIIMQYIKSSNRCPISGCPKKLRADRVVQDALLLIEIEELRKVNKETEVEDFTLLNEDD* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1404 241 ProSiteProfiles Zinc finger SP-RING-type profile. 139 224 IPR004181 GO:0008270
Ahy18g1404 241 CDD SPL-RING_NSE2 155 221 IPR004181 GO:0008270
Ahy18g1404 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 235 IPR013083 -
Ahy18g1404 241 SUPERFAMILY RING/U-box 155 204 - -
Ahy18g1404 241 Coils Coil 44 64 - -
Ahy18g1404 241 Pfam Zinc-finger of the MIZ type in Nse subunit 142 200 IPR004181 GO:0008270
Ahy18g1404 241 PANTHER UNCHARACTERIZED 10 229 IPR026846 GO:0000724|GO:0019789|GO:0030915
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1404 Ahy-Chr18 26815236 26819315 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1404 K22756 - gmx:100804379 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1404 18 26815236 26819315 Ahy18g1404 18 26815236 26819315 ECH
Ahy18g1404 18 26815236 26819315 Ahy8g2012 8 40204206 40208405 hybridization