Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00721 ATGCGATCATCGCCGTCTTCATTGGGTTCGTCGTCTCGATCGGGTTTGCGGCTTCGTAAGAAGCACAAGAGGTTGGATGCAATATGTGAGGAGGAGTACACTCGAAACCATGGTGAGTTGAATGATGATAATGATGGGTTGAATCCTGATGCAGGGGTTCGTCGGAGCTCCCGGGTTCGCCGTGCCCCGGTGCTTCTCGACGCGTCTCCCGCTCCCCCAAAGAAACGACGGAGGGTGGGGAAGGGTGGAATTGATCATGGTGTGGAGAGTCCTACGACTTTAGGGCGGGAAAATAGAGGTTCAGGTGGGGCTTGGAGTTCTAGGTTGAGATCAAGGGTTGAGAATGTAAGTTTTAGGGTAAAAGAGGACGGGGAATCGCGACGTGGGAAGAGGAAGCTTTTTGGGGATGTGGTGGGAAAAAGGGACGATGATGACGTTGGTAGGAAGGAGGAGTTGGAAGGTTTGATGCCGAAAGTGGTTAAGTCGAAGAGACCGGGGAGGATTAAAGCCACAAAGCACGATGAAGGGCATGAAGATGATGTATCTCATGGGAGTTTGGAGGAGAGTAAGAGTCAGGAAGTGGTGCTTGTGTCGAGCAGTGACGAGGAGAGTGATTCAGAGTCGGAAACTGAATTGTCGGGAGAGAATCAGATGGATGAATCGGATGGAAATGCCCCTTCCATGGGAGGAAACGAGGATGGGGATCAGATGGCTGATTCGGATGGGAGTGTCCCTCCCATGGTAGAGAATGAAGAGAGGAACTTATCCAGCGATTTGCGAATGAAGGAGTGTGGCGGTGAAATTGAATCGTCGTCACAGGTGGAACTTGAAGATAAAGTGGATTTTCAGTTAGAGGGTGCGAAGGAAAGCAAAAGTGTAGGTAATGCACCTGAGCAGGTTGATAATGAAGAATTCGCTCCTAAGAAGGTTGAGGATGGTGAAAATTTCTTGAAAGATGCAAATGTTGATAAGGAGGTTGATGTCAATGAAAATGTCTTGAAAGATGCAAATGCTGGGAGGAATGATGAGTTGAAACATGCTTCAAATGACAAGCGTGGTCACCTGCGTATCAAAGAGGGCAGGCGGTGTGGTTTGTGTGGTGGAGGGAGCGATGGTAAGCCTCCAAAAAGGTTAGCTCATGATAATGGTGAAAGTGAGAATGAAGCTTATAGTGGATCGTCATCTTCAGAGGAGACTAATTATGATATTTGGGATGGTTTTGATCACGAACCTGGTTGGCTTGGGCGTCTCTTGGGTCCTACTAAGGATCACCATGGTATTGCTAGAATATGGGTTCATCTGCACTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCCAACTTTGGATGCTTAAAAAATGTGAGGGCTGCACTTTTCCGAGGAAGGGCATTGAAGTGCACACGCTGTGGGAGGCGAGGGGCAACCACTGGTTGTCGTGTTGATCGTTGTCCAAGAACTTATCACTTGCCTTGTGCCAGAGCCAGTGGTTGCATCTTTGATCATCGTAAATTTCTCATAGCCTGTACAGATCATCGGCATCTCTTCCAACCTCGTGGTAATAAATATTTAGCCCGGATAAAGAAATTGAAGGCTAGGAAAATGATGTGGGAGATAAGGAAGCGGTCGAACGAAGCTTGTAGAAAAGATATTGGAGATGAAGAGAGATGGTTGGAAAACTGTGGAGAGGATGAAGAATTTTTGAAACGGGAGAACAAGAGGCTTCACCGTGATTTATTGAGAATAGCCCCGGTGTACATTGGGGGTTCAGACTCTGCCAGTGAAAATTTGTTTCAGGGTTGGGAATCTGTTGCTGGGCTCAAAGATGTCATCCGTTGTATGAAAGAAGTTGTCATTTTACCTCTGTTGTACCCTGAGCTATTTGATAATTTAGGGCTTACACCACCAAGAGGTGTTCTTTTACACGGGCATCCTGGAACAGGGAAAACTTTAGTTGTCCGGGCATTGATAGGTGCATGTGCCCGTGGTGATAAACGGATTGCATATTTTGCCCGGAAAGGTGCAGATTGCTTGGGAAAATATGTTGGTGATGCTGAGCGTCAACTAAGGCTATTGTTTCAGGTTGCTGAGAAATGTCAACCTTCTATAATATTCTTTGATGAAATAGATGGTTTGGCACCCCTCCGGACTAGGCAGCAAGACCAGACACATAGTTCTGTTGTGTCAACATTGCTTGCTCTTATGGATGGTCTGAAATCTAGGGGTTCAGTTGTGGTCATAGGTGCCACAAACCGTCCTGAAGCTGTTGACCCAGCACTTAGGCGCCCTGGTAGGTTTGATCGGGAAATTTATTTTCCATTACCATCAATTGAAGACAGAGCTTCCATTCTCTCACTTCACACTCAAAAGTGGCCAAAACCAATTACCGGATCCTTGCTTGAATGGATTGCAAGAAAAACACCAGGCTTCGCAGGTGCTGATCTCCAGGCTCTTTGTACGCAAGCAGCTATTAATGCTTTGAAGAGGAATTTCCCTTTGCAAGAAGTCTTGTCTTTAGCTGCCCAAGAAAAGCATTCTGGTTCTAAGCAAATTCCTCTTCCATCCTTTGCAGTGGAGGAGAGGGACTGGTTAGAGGCTGTTTTTTCTTCCCCACTACCTTGCTCCCGAAGAGATGCTGGAAATGCCGCCAATGATGTAGTGTGCTCCCCTCTTCCCATCCAACTTATTCCTTGTTTATTGCAGCCATTATGCTCTCTTCTTGTATCTCTATATCTTGACGAACGTCTATGGTTACCACTTCCCATATCGAAAGCTGTAACTGTGATAAAGGATGCTATGATTTCTGCTCTGGACAAAAAGCAAAAGCCTTTTGATCACTGGTGGTTGCACATGGATGAATTTCTTCACGAACACAACACTTTTCATGAGTTAAAGATAAAACTTACTTGTTCTGGTATTTTATCTGCGGATGATGGCATTATTGGTTCTAATGATACTGTGGATGATGCTTATGATAACAACTTGAGGCTAGAATCCTCCACAAGGAACCATCTTGGCATGCGTAGTGGTTTATTTGCATTGACCAACAAATCAGGATTTCGGATACTAATTTCTGGAAATCCACGAACTGGCCAGAGACATCTTGCTTCTTGTCTTCTTCACTGCTTTATTGGAAATATTGAAATACAGAAGATTGATATGGCAACTATTTTGCAAGAAGGGCATGGAGAAGTGGTGCAGGGCATTGCACAAATATTAATGAAATGTGCTAGCAGGCAATCTTGCGTAGTATTCTTGCCAAGAATTGATTTATGGGCTCTGGAGAAACATTTTCAAATTGCTGAAAGGACTGATTCGTGTTTAAAGATTGGCAAGTCTTGTTTCACACCAAACCAAGTTGTTGAGAAGGAAAGTGAGATCAGTACTGAGAAAAAATCAACTGAGATGGCCAATGGCCAGGCTATCATAAAGGCTTCATTTGCTTGGATGTCATTTATTGAGCAGGTGGAATCCATTGGTGTATCCACATCCTTGATGATTCTGGCTACTTCAGAAGTTCCCTATAAAGAACTTCCTCACAAAGTAAGAGAATTCTTCAAGAATTATCAATCTAAAGACAGCCAGTCAACTCCTTTGGAGCAGACAGTTCCTCGTTTCTCTCTGCAGATTGATGGGAATTTTGACCGTGACATGGTGATCAATTTATCTGCACTAGGGCTATTGAGAAATGTAGTTGAGCAGCTTGTTCAATTGCTTCATCAGAGATCTCATGTTCATAAGGGTGGACAAAAGGGTCACAGAACCTATGAATCAATTGAAGTTTGTAAAGATAAGGTATGTCAAAGAAAAGATGGATCAGCCAATGATAAAAAGAGTGAAATCCAACATGACTCCTTTACAAAAGTTCCACCAACATCAAACAGCAAGTCACTGAAGGGAAAGTCAACCCTGTTGTTGGCAATATCTACACTTGGCTATCAAATTCTCTTATACCCTCATTTTGCTGAACTTTGTTGGGTCACTTCAAAACTCAAAGAAGGTCCTTGTGCTGATGTAAGTGGACCTTGGAGGGGTTGGCCTTTCAATTCTTGTATAATTCGTCCTAATAATTCACATGACAAGGTTGTAGTTTCTTGTAATTCTGGTAGCATTAAAAGCAGAGAAGCATCTGGTCTCGTCAGAGGCTTGATTGCTGTTGGTTTATCAGCTTACAGAGGTGTTTATAGATCAGTTAGAGAAGTTTCCCTTGATGTAAGGAAGGTTCTCGAGGTTTTAATTGAGAAAATCAATACCAAAATTCAAGCTGGGAAAGATAGATATCAATATTTTCGTATTTTATCTCAAGTGGCTTATTTTGAAGACATGGTCAACAACTGGGCTTACTCATTGCTAAGTCTGGAGCAGGATTCTCATGAGCATACAACAAAGGTTACACTAGCAAGTGGTGGGTCGTTAAACAGTCATCCCACTAGTGAAAATCACAAATCAGGAGGCGAGGAGTGCCATTTTGCTGTTCCTGGAGATGGTCATGATTTGGAGACATTGGAGGAAAGTCAGAACGGAATTGCTGCTGAAATGGCTGGATGTATCACCTCTAATAACCAAAATGGTACTTTAGATATGGATTATGATGGAAATGCTAGCTCTGAAGGATCTCTACAGAATCATTCTTTTTCTGAAAAGCATATCAACAACTCTGCTGTTGCTGCTGCTATGACTGCAAACCAACCACTTTATCCAGCTACAAGTCGGGAGAATGGAACACTATTAGTGCAACATGAATCTCTAACTGCTGGAAATAATGAAGAGGTGCGTGAAGAACTAGGGATTTCAAATAACTTCAGCAAATCCTTGGGCACTCAATGTGTGGTTCTTTCTGGAAATGGAGTTCACGCTGCTTTCGAACCAGAGACACAGAATGTTGAGATTGGTAACTGTCCCGTCTCTGATCAGCCTCTTATTGTGTCCTCATCCTCGCAAGACATTGGTGCAAAATCAAGTGATGTTAAATCTGATAAACATGAGAATGCTACAGATAATAATGTCTCTTCAAGTAATGGTAGTGTTCCTGCTGAGTCGGGGGTTATTTGCTTGTATCAATGTTGCCCTGCATGTCTTCATAGTCTCCATCATTTGACAAAGAAAATGCTTCTTGGAGAGTGGGGGTTGAACAGTGACCAGTGGAGTGTAGAAGATGTTCATGATGCTGTTTCATCATTATCTGTGGATCTTATTTCAGCAGTTAGAAAAAGCTTCATGGCTGAAGATTTCATTGATTCATTAAAGAAAAGCTCAAGGAATGAAAACCATGGAACATCTCTTGATTGTGTGAACCTGAGAACGTGTAATGTTGAAAGCCGATGCAAGGATGTTGTGCCTGCTGAATGTGTTTCTCACTCCGCAAGCCAACATGCAACTGCAATTGAAGATACGGCACTAAATGAAGAATCAGCAATGGTTGATCTTAAATTTGTTTTCAGAGATGGTGTCCTAGTTCATATGGACCCTGACAAGGATGTCTCAGCTCACTGTAAATTTAAGAACTTGTGCCTTTGTTCTCTTAGAGAGTTGATACTAATGACAAAGCGCCCTTTTGATTAG 5559 0.4319 MRSSPSSLGSSSRSGLRLRKKHKRLDAICEEEYTRNHGELNDDNDGLNPDAGVRRSSRVRRAPVLLDASPAPPKKRRRVGKGGIDHGVESPTTLGRENRGSGGAWSSRLRSRVENVSFRVKEDGESRRGKRKLFGDVVGKRDDDDVGRKEELEGLMPKVVKSKRPGRIKATKHDEGHEDDVSHGSLEESKSQEVVLVSSSDEESDSESETELSGENQMDESDGNAPSMGGNEDGDQMADSDGSVPPMVENEERNLSSDLRMKECGGEIESSSQVELEDKVDFQLEGAKESKSVGNAPEQVDNEEFAPKKVEDGENFLKDANVDKEVDVNENVLKDANAGRNDELKHASNDKRGHLRIKEGRRCGLCGGGSDGKPPKRLAHDNGESENEAYSGSSSSEETNYDIWDGFDHEPGWLGRLLGPTKDHHGIARIWVHLHCAVWSPEVYFANFGCLKNVRAALFRGRALKCTRCGRRGATTGCRVDRCPRTYHLPCARASGCIFDHRKFLIACTDHRHLFQPRGNKYLARIKKLKARKMMWEIRKRSNEACRKDIGDEERWLENCGEDEEFLKRENKRLHRDLLRIAPVYIGGSDSASENLFQGWESVAGLKDVIRCMKEVVILPLLYPELFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGACARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPLRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSIEDRASILSLHTQKWPKPITGSLLEWIARKTPGFAGADLQALCTQAAINALKRNFPLQEVLSLAAQEKHSGSKQIPLPSFAVEERDWLEAVFSSPLPCSRRDAGNAANDVVCSPLPIQLIPCLLQPLCSLLVSLYLDERLWLPLPISKAVTVIKDAMISALDKKQKPFDHWWLHMDEFLHEHNTFHELKIKLTCSGILSADDGIIGSNDTVDDAYDNNLRLESSTRNHLGMRSGLFALTNKSGFRILISGNPRTGQRHLASCLLHCFIGNIEIQKIDMATILQEGHGEVVQGIAQILMKCASRQSCVVFLPRIDLWALEKHFQIAERTDSCLKIGKSCFTPNQVVEKESEISTEKKSTEMANGQAIIKASFAWMSFIEQVESIGVSTSLMILATSEVPYKELPHKVREFFKNYQSKDSQSTPLEQTVPRFSLQIDGNFDRDMVINLSALGLLRNVVEQLVQLLHQRSHVHKGGQKGHRTYESIEVCKDKVCQRKDGSANDKKSEIQHDSFTKVPPTSNSKSLKGKSTLLLAISTLGYQILLYPHFAELCWVTSKLKEGPCADVSGPWRGWPFNSCIIRPNNSHDKVVVSCNSGSIKSREASGLVRGLIAVGLSAYRGVYRSVREVSLDVRKVLEVLIEKINTKIQAGKDRYQYFRILSQVAYFEDMVNNWAYSLLSLEQDSHEHTTKVTLASGGSLNSHPTSENHKSGGEECHFAVPGDGHDLETLEESQNGIAAEMAGCITSNNQNGTLDMDYDGNASSEGSLQNHSFSEKHINNSAVAAAMTANQPLYPATSRENGTLLVQHESLTAGNNEEVREELGISNNFSKSLGTQCVVLSGNGVHAAFEPETQNVEIGNCPVSDQPLIVSSSSQDIGAKSSDVKSDKHENATDNNVSSSNGSVPAESGVICLYQCCPACLHSLHHLTKKMLLGEWGLNSDQWSVEDVHDAVSSLSVDLISAVRKSFMAEDFIDSLKKSSRNENHGTSLDCVNLRTCNVESRCKDVVPAECVSHSASQHATAIEDTALNEESAMVDLKFVFRDGVLVHMDPDKDVSAHCKFKNLCLCSLRELILMTKRPFD 1852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00721 1852 SMART AAA_5 634 775 IPR003593 GO:0016887
Phco10g00721 1852 ProSitePatterns AAA-protein family signature. 743 761 IPR003960 GO:0005524|GO:0016887
Phco10g00721 1852 Gene3D - 600 773 IPR027417 -
Phco10g00721 1852 MobiDBLite consensus disorder prediction 1 108 - -
Phco10g00721 1852 MobiDBLite consensus disorder prediction 366 398 - -
Phco10g00721 1852 MobiDBLite consensus disorder prediction 94 108 - -
Phco10g00721 1852 MobiDBLite consensus disorder prediction 168 187 - -
Phco10g00721 1852 MobiDBLite consensus disorder prediction 23 44 - -
Phco10g00721 1852 FunFam ATPase family, AAA domain-containing 2 598 780 - -
Phco10g00721 1852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 831 IPR027417 -
Phco10g00721 1852 MobiDBLite consensus disorder prediction 288 312 - -
Phco10g00721 1852 Pfam ATPase family associated with various cellular activities (AAA) 638 773 IPR003959 GO:0005524|GO:0016887
Phco10g00721 1852 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 358 514 - -
Phco10g00721 1852 MobiDBLite consensus disorder prediction 121 260 - -
Phco10g00721 1852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 514 IPR013083 -
Phco10g00721 1852 Gene3D - 774 843 - -
Phco10g00721 1852 Pfam AAA+ lid domain 799 831 IPR041569 -
Phco10g00721 1852 PANTHER AAA DOMAIN-CONTAINING 13 1748 IPR045199 -
Phco10g00721 1852 MobiDBLite consensus disorder prediction 1465 1485 - -
Phco10g00721 1852 MobiDBLite consensus disorder prediction 121 160 - -
Phco10g00721 1852 MobiDBLite consensus disorder prediction 200 216 - -
Phco10g00721 1852 ProSiteProfiles Extended PHD (ePHD) domain profile. 400 512 IPR034732 -
Phco10g00721 1852 MobiDBLite consensus disorder prediction 1649 1674 - -
Phco10g00721 1852 Pfam PHD-like zinc-binding domain 433 512 - -
Phco10g00721 1852 MobiDBLite consensus disorder prediction 1270 1294 - -
Phco10g00721 1852 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 774 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00721 Phco-Chr10 8769587 8776561 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00721 10 8769587 8776561 Phco10g00721 10 8769587 8776561 ECH