Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01498 ATGGCTTCATCCTCGCACGGCGACCAAATGAGGATCGTGGCGACCCAGTTCTGTTCTGATGATCAGACTCTCATTGCTGTGAATAATTTTCGTAAGTTACTTGAGGATGAAGTGTCAAAATTGAAGGGCCAGTATACTACTTCAGATCCTAATAGTAATCCTTTGGTTCGCCAATTTAAGGAAGCTGTATGGAAAGTTCATCATGAAGGGCAGCCAATGCCAGGAGAAGAGCAGGAGGACATTGTAATGACAAGTACCCAATCCAGTATTTTGAATATGACTTGCCCATTGACTGGAAAACCTGTTACTGAGCTTGAAGAACCAGTTCGCAGTGTGGAATGCAAGCATATTTATGAAAAGAGAATAATAATGCAATATATAAAGTCATCCAATCGATGTCCAATATCAGGTTGCCCGAAGAAATTGCGTGCAGATAGGGTGGTGCAGGATGCCTTGTTACTGATTGAGATTGAGGAATTGCGCAAAGTGAACAAAGAAACTGAAGTGGAAGACTTTACTCTCCTTAATGAAGACGATTGA 540 0.4167 MASSSHGDQMRIVATQFCSDDQTLIAVNNFRKLLEDEVSKLKGQYTTSDPNSNPLVRQFKEAVWKVHHEGQPMPGEEQEDIVMTSTQSSILNMTCPLTGKPVTELEEPVRSVECKHIYEKRIIMQYIKSSNRCPISGCPKKLRADRVVQDALLLIEIEELRKVNKETEVEDFTLLNEDD 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01498 179 Pfam Zinc-finger of the MIZ type in Nse subunit 79 138 IPR004181 GO:0008270
Aip08g01498 179 PANTHER UNCHARACTERIZED 27 167 IPR026846 GO:0000724|GO:0019789|GO:0030915
Aip08g01498 179 CDD SPL-RING_NSE2 93 159 IPR004181 GO:0008270
Aip08g01498 179 ProSiteProfiles Zinc finger SP-RING-type profile. 77 162 IPR004181 GO:0008270
Aip08g01498 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 173 IPR013083 -
Aip08g01498 179 SUPERFAMILY RING/U-box 93 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01498 Aip-Chr8 25526005 25528798 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01498 K22756 - gmx:100804379 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01498 08 25526005 25528798 Aip08g01498 08 25526005 25528798 ECH