Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06186 ATGGCCTCAACTTCACGCGGCGGCGTTGCTGGACGGATAAAGAACGTAGCTTCCACCTTCTGCTCCGAATCTCAGCCTCTCATTTCTGATATCCGACAAACTGTGACTTTGATGAAGGAAATTGCAGTTCAATTGGAGAAAGACAAGCTTTTTGATAAGGTGAAGGAGCTGGAAGATGCGGTTGTTGAATTAGCGGGCCTATCTGACCTCAGTGTGCATTTTTCAAATTCAGTTGAAGCTTTTGCAAACAGATACCAGCCTGGGGAACAGTTGACTAATTTTAATAAGGTGTTTGAGGATGAAGTTTCAAAGTTTAAGGCCAATCCAACTTCAGATATTAATAAACATTCTTTAGTACGCCAATTTAAGGAAGCTGTATGGATTGGAAAACCTACCACTCATCTGTCTAAGTGTTCTTTCTTAAGTCTTTACTGCTGGGTGCTGGCACTGGCCGTTATTTTAAATTCTGGCAAAGGACAGCCAATGCCTGGCGAAGAGCAGGAGGACATTGTAATGACCAGTACTCAATCTAATATATTGAATATGACATGTCCACTGAGTGGAAAGCCTGTTACTGAGCTTGAAGAACCAATTCGCAGTATGGAATGTAGGCACATTTATGAAAAGAAAGCAATAATGCAATATATAAGGAATAAGCAACACCGTGGTCAATGCCCAATGGCAGGTTGTCCAAAGACGTTGCGGGAAGGTATACTGGTACATGACCCGTCATTACCAGTGGAGATTGATGAAATGCGCAGAATGAATAAAGAAACTAACGTAGAAGATTTCACCATGCTTGATGAAGATTAG 813 0.417 MASTSRGGVAGRIKNVASTFCSESQPLISDIRQTVTLMKEIAVQLEKDKLFDKVKELEDAVVELAGLSDLSVHFSNSVEAFANRYQPGEQLTNFNKVFEDEVSKFKANPTSDINKHSLVRQFKEAVWIGKPTTHLSKCSFLSLYCWVLALAVILNSGKGQPMPGEEQEDIVMTSTQSNILNMTCPLSGKPVTELEEPIRSMECRHIYEKKAIMQYIRNKQHRGQCPMAGCPKTLREGILVHDPSLPVEIDEMRRMNKETNVEDFTMLDED. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06186 270 PANTHER UNCHARACTERIZED 9 260 IPR026846 GO:0000724|GO:0019789|GO:0030915
Seca4g06186 270 Pfam Zinc-finger of the MIZ type in Nse subunit 169 230 IPR004181 GO:0008270
Seca4g06186 270 ProSiteProfiles Zinc finger SP-RING-type profile. 166 254 IPR004181 GO:0008270
Seca4g06186 270 SUPERFAMILY RING/U-box 182 236 - -
Seca4g06186 270 CDD SPL-RING_NSE2 182 251 IPR004181 GO:0008270
Seca4g06186 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 265 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06186 Seca-Chr4 121860576 121865181 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06186 K22756 - gmx:100804379 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g06186 4 121860576 121865181 Seca4g06186 4 121860576 121865181 ECH