Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0206 ATGACTCCCACATATGCCAAAACTATAACTAACTTCAACCACCTAGCTCAGCAAATCAAGAAATGTTCCATGGTCAAGGAGCTGGAATCTGTATATGCCTCCATGATAAAGGCCAATGCAAACCAAGACTGTTTCTTGATGAATCAATTCATCGCTGCATGTTCCATCTTTCATAGAATAGATTATGCAATTCTAGCATTTACCCACATGCAGGAGCCCAATGTTTTTGTGTACAATGCCATGATCAGGGCCCTTGTTCAATGTTATCATCCAGTTCAAGCTCTAGACTGTTATTTAGATATGGTCCAAGCTCAAGTCTCTCCTACTAGTTTTACATTTTCATCGTTGGTTAAGGCTTGTAGCTTGGTGTCTGAATTGGGGTTTGGAGAAGCTGTGCATGGTCATATTTGGAAATATGGGTTTGATTCTCATGTGTTTGTTCAGACTGCTTTGGTTGATTTCTATGGGAATGCTGGTAAAATTGTTGAGGCGAGGAGGGTGTTTGATGAAATGTCTGAGAGAGATGTTTTTGCATGGACCACGATGATTTCGGTTCATGCCAGGACTGGGGATATGAGTTCTGCGAGGCAGTTGTTTGATGAAATGCCGGTGAGGAACACTGCATCATGGAATGCTATGATTGATGGGTATTCAAGATTGAGGAACGTGGAATCTGCGGAGCTGTTGTTTAGTCAAATGCCCAACAGGGATATAATTTCATGGACAACCATGATCGCTTGCTATTCTCAGAACAAACAGTTTAGAGAAGCTTTAGCAGTTTTTAATGAGATGCAGACAAATGGGATCGACCCTGATGAGGTAACCATGGCAACTATTATTTCAGCTTGTGCCCATCTTGGAGCACTTGACTTAGGAAAGGAAATACATCTCTATGCAATGGAAATGGGGTTTGATCTTGATGTTTATATCGGGTCTGCGTTGATTGACATGTATGCCAAGTGTGGGAGCTTAGACAAATCCCTTGTGGTATTCTTTAAATTGCGGAAGAAGAACCTGTTCTGTTGGAACTCAATAATCGAAGGGCTTGCAGTTCACGGTTATGCAGAAGAAGCGCTGGCCATGTTTAGCAGGATGCAGAGGGAGAAAATCAAACCAAATGGGGTTACCTTCATTAGTGTTCTAGGCGCCTGCACTCACGCAGGACTCGTTGAAGAAGGTCGCAAGAGGTTTCTAAGCATGAGCCGTGATTTTTCCATCCCTCCCGAGATTGAACACTATGGTTGCATGGTTGATCTATTGGGCAAGGCCGGTCTGCTTGAAGATGCATTGGAATTGGTAAGGAGCATGAGAATGGAACCAAATTCTGTTATATGGGGTGCATTGTTGGGTGGCTGCAAGCTTCATAGGAACTTGAAGATTGCTCAAGTTGCAGTCAATGAATCGAAGGTTTTGGAGCCAAACAATAGCGGGTATTACACCCTTTTGGTTAACATGTATGCAGAAGTAAATCGATGGAGCGAGGTAGCGAATATCAGGGCAACAATGAAGGAACTAGGAGTGGAGAAGACGAGCCCCGGGTCCAGTTGGATTGAAATGGATAGAAAAATTCATCAGTTTGCAGCTTCTGATAAATCTCACCTGGCTTCTGACGAGATTTACACTTTGCTGGTTGAGTTAGATGGGCAGCTGAAGCTATCTGGCTATGTACCCGAACTTGGATCTGTTCCATTATAG 1695 0.4324 MTPTYAKTITNFNHLAQQIKKCSMVKELESVYASMIKANANQDCFLMNQFIAACSIFHRIDYAILAFTHMQEPNVFVYNAMIRALVQCYHPVQALDCYLDMVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMDRKIHQFAASDKSHLASDEIYTLLVELDGQLKLSGYVPELGSVPL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0206 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Vvi19g0206 564 Gene3D Tetratricopeptide repeat domain 295 534 IPR011990 GO:0005515
Vvi19g0206 564 Gene3D Tetratricopeptide repeat domain 5 127 IPR011990 GO:0005515
Vvi19g0206 564 Gene3D Tetratricopeptide repeat domain 130 205 IPR011990 GO:0005515
Vvi19g0206 564 Gene3D Tetratricopeptide repeat domain 206 294 IPR011990 GO:0005515
Vvi19g0206 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Vvi19g0206 564 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 311 541 - -
Vvi19g0206 564 Pfam PPR repeat 412 438 IPR002885 -
Vvi19g0206 564 Pfam PPR repeat 149 175 IPR002885 -
Vvi19g0206 564 Pfam PPR repeat 178 205 IPR002885 -
Vvi19g0206 564 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 559 IPR046960 GO:0003723|GO:0009451
Vvi19g0206 564 Pfam E motif 455 518 IPR046848 -
Vvi19g0206 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Vvi19g0206 564 FunFam Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 1 131 - -
Vvi19g0206 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
Vvi19g0206 564 NCBIfam pentatricopeptide repeat 413 437 IPR002885 -
Vvi19g0206 564 NCBIfam pentatricopeptide repeat 209 238 IPR002885 -
Vvi19g0206 564 NCBIfam pentatricopeptide repeat 148 176 IPR002885 -
Vvi19g0206 564 NCBIfam pentatricopeptide repeat 239 273 IPR002885 -
Vvi19g0206 564 NCBIfam pentatricopeptide repeat 77 109 IPR002885 -
Vvi19g0206 564 NCBIfam pentatricopeptide repeat 340 373 IPR002885 -
Vvi19g0206 564 NCBIfam pentatricopeptide repeat 178 204 IPR002885 -
Vvi19g0206 564 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 205 298 - -
Vvi19g0206 564 Pfam PPR repeat family 237 284 IPR002885 -
Vvi19g0206 564 Pfam PPR repeat family 337 384 IPR002885 -
Vvi19g0206 564 Pfam PPR repeat family 73 120 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0206 Vvi-Chr19 2291819 2293513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0206 44 558 Glycoside Hydrolase AT3G49170 31.127 1.02e-96 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0206 - - vvi:100264065 1131.7