Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2840 ATGGCGTCAACTTCCCATGGCGGCGGTGGCGTCGCTGCACGAATGAGGAACGCCGCTTCCACCTTCTGCTCCGACTCTCAGCCGCTTATCGCCGATATCCGAAAAACCGTGCTTCTGATGAAGGACATCGCAGTTCAATTGGAGAAAGACAACCTCCCTGATAAGGTGAAGGAGCTTGAAGATGCGGTTATTGAGTTAGTAGGGTTATCTGAACTAAGTGTGCAATTTTCTTCCGCGGTTCAAGTTTTTGCCAACAGATACCAACCTGGAGAAGAGTTCACTAATTTTAGTAAGCTGTTTGAGGATGAGCTTTCCGAGTTTAAGGCCAACCAATCTTCTGATCTTCCTAAACATCCTTTAATACGCCAGTTTAAAGAAGCTGTTTGGAAAGTTCATCATGCGGGACAGCCAATGCCAGGTGAAGAGCAAGAGGATATTGTAATGACCAGTACGCAGTCTAATATTTTAAATGTTAATTGTCCATTGACTGGAAAGCCTATCACTGAGCTTGTAGAGCCAGTTCGCAGCATGGAGTGTAGGCACATTTACGAAAACAAAATAATTATGCAATATTTGAAGTCAAATCAACAACGTGGTCGATGCCCAATATCAGGTTGCCCAAGGATATTGCAGGCAGATAAGCTGGTGCAAGATCCGTTGTTACTGATTGAGATTGATGAAATGCGCAAAATGAATAAAGAAACTGAAGTAGAAGATTTTACCATGCTCGATGAGGATTAG 741 0.4359 MASTSHGGGGVAARMRNAASTFCSDSQPLIADIRKTVLLMKDIAVQLEKDNLPDKVKELEDAVIELVGLSELSVQFSSAVQVFANRYQPGEEFTNFSKLFEDELSEFKANQSSDLPKHPLIRQFKEAVWKVHHAGQPMPGEEQEDIVMTSTQSNILNVNCPLTGKPITELVEPVRSMECRHIYENKIIMQYLKSNQQRGRCPISGCPRILQADKLVQDPLLLIEIDEMRKMNKETEVEDFTMLDED* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2840 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 241 IPR013083 -
Vra5g2840 246 SUPERFAMILY RING/U-box 160 207 - -
Vra5g2840 246 Pfam Zinc-finger of the MIZ type in Nse subunit 145 206 IPR004181 GO:0008270
Vra5g2840 246 CDD SPL-RING_NSE2 160 227 IPR004181 GO:0008270
Vra5g2840 246 PANTHER UNCHARACTERIZED 10 235 IPR026846 GO:0000724|GO:0019789|GO:0030915
Vra5g2840 246 ProSiteProfiles Zinc finger SP-RING-type profile. 142 230 IPR004181 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2840 K22756 - gmx:100804379 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2840 5 36307322 36311801 Vra5g2840 5 36307322 36311801 ECH