Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01408 ATGGTGAATCCCACTGTGCCTTGGAAGGCCCCTGAGGTTGAAAATGATGACGATTTTAGAGTTCATGTGTTCTCTTCATCATCCGAGAACCCAAAGCCTGTTGTTTCACCATTGGAGTTGGCAAACCAGATTAGGGAGAAATTGCTGGAAAAGCTTCACGAAAAATGGAGTTCAGTGGAGAAACAACCATACCCTGCTATGTATTCAAGTATTTTTGGAGGTATCACACTTGATCCGGCAATGATGGTAATCCCCCTCGATGATCACATGGTACACAGAGGGCATGGTGTGTTTGATACATCCATTGTTCTTGATGGATACCTGTATGAATTGGATGTTCACCTTGATAGATTCCTGCTGTCAGCCTCCAAAGCAAAGATATCCTCTCCCTTTTCTCAATCAACGCTTCGCAGCATTATCATACAACTGACTGCAGCATCAAAATGCAAGAAGGGAACTCTAAGATTTTGGCTGAGTGCAGGTCCTGGTGATTTCTTGCTGTCATCAGCAGGGTGTCCAACATCTGCATTCTATGCAGTAGTGATTGACCATGATTTTTCCCAATGCAAAGAGGGAGTTAAAGTGATTACTTCCAACGTGCCAATGAAGCCTCCTCTATTTGCCACAGCTAAAAATGTGAATTATCTGCCAAATGTCCTTTCAGTGATGGAAGCTGAAGAGAAAGGAGCATCTTCTTCTGTATGGGTTGATGAGGAAGGTTATATTGCTGAAGGTCCAAATGTGAATGTTGCTTTCATAACACAAGACAAAGAACTTGTCATGCCTCCTTTTGATAACATCCTACATGGTTGCACTGCAAAAAGGCTTCTTCAACTCGCACCCAAGTTGGTTGATCAAGGGCTCCTGAAAAGTGTAGCAACTAAAAAAATATCTGTGGAAGAAGCTAAAGCTGCTGCTGAAATGATGTATGTGGGAAGCACACTTCCTTTGTTGCCTATCATAGTGTGGGATGATCAACCCATTGGCAATGGAAGTGTTGGAGAATTAACAATGGTACTTTCAAATTTGCTGTGGGATGATATGGTAACTGGCTCTGGCACACAGAGAATACCTATCTACCAAGAGGTTTCTCTTTGTATTGCTTTATGTATTTTAAGTGTGAACACTGAACAAGTGAAGCAGCAGCTGAACCTTGGGGAGAAGAGATATATTGAGTTGTTGAGTTGTTCCAGTGAAGAAAAGGTGGCATGTGACCTTTACGCATTGAACTACTGTGGATGGAGATGA 1248 0.4239 MVNPTVPWKAPEVENDDDFRVHVFSSSSENPKPVVSPLELANQIREKLLEKLHEKWSSVEKQPYPAMYSSIFGGITLDPAMMVIPLDDHMVHRGHGVFDTSIVLDGYLYELDVHLDRFLLSASKAKISSPFSQSTLRSIIIQLTAASKCKKGTLRFWLSAGPGDFLLSSAGCPTSAFYAVVIDHDFSQCKEGVKVITSNVPMKPPLFATAKNVNYLPNVLSVMEAEEKGASSSVWVDEEGYIAEGPNVNVAFITQDKELVMPPFDNILHGCTAKRLLQLAPKLVDQGLLKSVATKKISVEEAKAAAEMMYVGSTLPLLPIIVWDDQPIGNGSVGELTMVLSNLLWDDMVTGSGTQRIPIYQEVSLCIALCILSVNTEQVKQQLNLGEKRYIELLSCSSEEKVACDLYALNYCGWR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01408 415 CDD ADCL_like 88 344 IPR017824 GO:0008696|GO:0030170|GO:0046656
Vimu4g01408 415 FunFam D-amino-acid transaminase, chloroplastic 44 182 - -
Vimu4g01408 415 Pfam Amino-transferase class IV 96 320 IPR001544 GO:0003824
Vimu4g01408 415 Gene3D - 40 181 IPR043131 -
Vimu4g01408 415 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 72 348 IPR036038 GO:0003824
Vimu4g01408 415 Gene3D - 182 361 IPR043132 -
Vimu4g01408 415 PANTHER AMINO-ACID AMINOTRANSFERASE 38 353 - -
Vimu4g01408 415 FunFam D-alanine aminotransferase 184 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01408 Vimu-Chr4 14656805 14660988 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01408 K18482 - gmx:100798871 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01408 4 14656805 14660988 Vimu4g01408 4 14656805 14660988 ECH