Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0202 ATGATTCTGATGAAGGAAGTGGCGGTTGATTTGGAGAGGGACGGCCAGTCTCAGATGGTGAAAGAGCTTGAAGATGCCGTTGTTGAGTTATTGGGAACATCAGAAGACTGTACACAATTTTCAGCTGCAATTCAGTCTGTTGGAAATGAGCACCAACCCAGGCCTGAGTTAACTGATTTTAAGAAGTTATTTGAGGATGAGGTTGCAAAGCTCAAGGCCAGTTCCTCTTTTGCTCCACAAAGCCATCCATTATTACGTCAATTCAGGGAAGCTGTTTGGAATGTTCACCATGCAGGACAGCCAATGCCAGGTGATGAGCAGGAGGACATTGTAATGACCAGTACACAATGCAACCTCTTGAATATTACTTGCCCATTAAGTGGAAGACCTGTTACTGAATTAGCAGATCCAGTTCGCAGTGTGGATTGCAAGCATATTTATGAAAAGAAGGCCATCTTGCACTACATAAAATCCAAACATGGACGCGCTCAATGTCCTGTTGCAGCTTGCCCGAAAATACTGCAGGCAGAAAGGGTAGTGTGTGACGCATTGTTACAAATTGAAATTGATGAAATGAAATCAATGAGTAAGCAACCTGGTCGAACTGATGTAATAGAAGATTTCACCGAGCTTGATGATGATGATGATGAAGAAGAAGAAGACGACTGA 669 0.4305 MILMKEVAVDLERDGQSQMVKELEDAVVELLGTSEDCTQFSAAIQSVGNEHQPRPELTDFKKLFEDEVAKLKASSSFAPQSHPLLRQFREAVWNVHHAGQPMPGDEQEDIVMTSTQCNLLNITCPLSGRPVTELADPVRSVDCKHIYEKKAILHYIKSKHGRAQCPVAACPKILQAERVVCDALLQIEIDEMKSMSKQPGRTDVIEDFTELDDDDDEEEEDD* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0202 222 MobiDBLite consensus disorder prediction 195 222 - -
Vvi19g0202 222 CDD SPL-RING_NSE2 122 191 IPR004181 GO:0008270
Vvi19g0202 222 ProSiteProfiles Zinc finger SP-RING-type profile. 106 194 IPR004181 GO:0008270
Vvi19g0202 222 MobiDBLite consensus disorder prediction 207 222 - -
Vvi19g0202 222 PANTHER UNCHARACTERIZED 5 201 IPR026846 GO:0000724|GO:0019789|GO:0030915
Vvi19g0202 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 203 IPR013083 -
Vvi19g0202 222 Pfam Zinc-finger of the MIZ type in Nse subunit 108 170 IPR004181 GO:0008270
Vvi19g0202 222 SUPERFAMILY RING/U-box 123 170 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0202 K22756 - vvi:100253746 408.297