Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01133 ATGGCGTCAACGTCACGCGGCGGAGGCGCCGCCGCACGATTGCAGAACGCTGCTACCACCTTCTCCTCCGACTCTCAGCCTATCATTGCCGATATTCGAAAAACCGTGCTCATGATGAAGGAAATCGCAGTTCAATTGGAGAAAGACAACCTCTCCGACAAGGTGAAGGAGATGGAAGACGCGGTTATTGAGTTAGTAGGACTATCTGAACTCAGTGTGCAATTTGCGTCATCAGTTCAAGCTTTTGCTAACAGATACCAGCCTGGAGAACAGTTCACTAATTTTAACAAGTTGTTTGAGGATGAGCTTTCCAAGTTCAAGGCCAACCGATCTTCAGATCTTTCTAGAAATCCTTTAGTACGCCAATTTAAGGAAGCTGTTTGGAATGTTCATCATGCGGGACAGCCAATGCCAGGTGAAGAACAGGAGGATATTGTAATGACCAGTACCCAGTCTAATATTTTAAATATTGCCTGTCCATTGACTGGAAAACCTGTCACCGAGCTTGCGGAACCAGTTCGCAGCATGGAATGTAGGCACATTTATGAAAAGAAAGTAATAATGCAATATTTGAGATCAAAGCAACAACGTGGTCAATGCCCAATATCAGGTTGCCCAAAGATATTGCAGGCAGATAAGCTGGTGCAAGATCCGTTGTTACTGGTTGAGATTGATGAAATGCGCAAAATGAATAAAGAAACTGATGTAGAAGATTATACCATGCTTGATGAAGACTAG 738 0.439 MASTSRGGGAAARLQNAATTFSSDSQPIIADIRKTVLMMKEIAVQLEKDNLSDKVKEMEDAVIELVGLSELSVQFASSVQAFANRYQPGEQFTNFNKLFEDELSKFKANRSSDLSRNPLVRQFKEAVWNVHHAGQPMPGEEQEDIVMTSTQSNILNIACPLTGKPVTELAEPVRSMECRHIYEKKVIMQYLRSKQQRGQCPISGCPKILQADKLVQDPLLLVEIDEMRKMNKETDVEDYTMLDED 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01133 245 SUPERFAMILY RING/U-box 159 206 - -
Cca10g01133 245 Pfam Zinc-finger of the MIZ type in Nse subunit 144 205 IPR004181 GO:0008270
Cca10g01133 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 240 IPR013083 -
Cca10g01133 245 CDD SPL-RING_NSE2 159 226 IPR004181 GO:0008270
Cca10g01133 245 ProSiteProfiles Zinc finger SP-RING-type profile. 141 229 IPR004181 GO:0008270
Cca10g01133 245 PANTHER UNCHARACTERIZED 8 234 IPR026846 GO:0000724|GO:0019789|GO:0030915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01133 K22756 - gmx:100804379 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01133 10 14418668 14425140 Cca10g01133 10 14418668 14425140 ECH