Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03075 ATGGCGTCATCTTCACACGGCGGCGCTTCTGGTCGGATAAAGAACTTAGCTGCCACCTTCGGCTCCGACATTCAGCCTTTCATTTTGGATATCCGAACAACAGTGGGAATGATGAAGAATATTGCAGTTCAATTGGAAAAAGACAATCTTACTGACAAGGTGAAGGAAATGGAAGATGCTGTTGTGGAGTTAGTTGAGTTATCTGAACACAGTGTGCATTTTTCATCTGCTGTTCAAGCTTTTGGTAATAGATACCAACCTGGAGAACAGTCGACTGATTTTCATAAGGTATTTGAGGATGAAATTTTGCAGTATAAGGCCAACCGAAATTCAGATGTTCAAAAACATCCTTTAGTGCGCCAATTTAAGGAAGCTGTATGGAAAGTGCATCATGAGGGACAGCCAATGCCAGGTGAAGAGGAGGAGGACATTGTAATGACCAGTACCCAATCTAATATTTTGAATTTTAAATGTCCATTGAGCGGAAAGCCTATTACTGAGCTTCAAGAACCAGTTCGCAGCATGCAATGTAGGCACATTTATGAAAAGCAAGTGATAATGCAATATATCCAGTCAAAGAATAACTGTACTCGATGCCCAATACCAGGTTGCCCAAAAGTGTTGGATGCGAATGTGCTGGTACAGGATCCATCGTTGGCTGTGGATATTGATGAAATGCGAAAAATGAACAACAAAGAAACTAATATAGAGGATTTCACCATGCTTGATGAAGATTAA 738 0.4079 MASSSHGGASGRIKNLAATFGSDIQPFILDIRTTVGMMKNIAVQLEKDNLTDKVKEMEDAVVELVELSEHSVHFSSAVQAFGNRYQPGEQSTDFHKVFEDEILQYKANRNSDVQKHPLVRQFKEAVWKVHHEGQPMPGEEEEDIVMTSTQSNILNFKCPLSGKPITELQEPVRSMQCRHIYEKQVIMQYIQSKNNCTRCPIPGCPKVLDANVLVQDPSLAVDIDEMRKMNNKETNIEDFTMLDED 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03075 245 PANTHER UNCHARACTERIZED 9 235 IPR026846 GO:0000724|GO:0019789|GO:0030915
Vifa1g03075 245 Coils Coil 40 67 - -
Vifa1g03075 245 Pfam Zinc-finger of the MIZ type in Nse subunit 143 204 IPR004181 GO:0008270
Vifa1g03075 245 CDD SPL-RING_NSE2 156 225 IPR004181 GO:0008270
Vifa1g03075 245 ProSiteProfiles Zinc finger SP-RING-type profile. 140 234 IPR004181 GO:0008270
Vifa1g03075 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 239 IPR013083 -
Vifa1g03075 245 SUPERFAMILY RING/U-box 156 205 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03075 K22756 - gmx:100804379 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03075 1 481131470 481139432 Vifa1g03075 1 481131470 481139432 ECH