Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1177 ATGGCATACACCATTAGAGCTAGGAGAAGAGTTTACGAAGGAATCTTCCAGACCTTGTTCAATGTCAAAAGCTCAAGCCCACGCTTCGTGCATTCGTGCCCAGCCGCGTTGATCCAGAACCTTCTCAAGTTCCGAAGAGACAAGCCCACGGAGCAAATGGAGCGAGCCCTGGACCAGTGCGGGCTCGACCTCAACGACGACCTGGTTCTCTCCGTGCTGCGACGACACCGTTCCGATTGGCGACCCGCGCACGTGTTCTTCAACTGGGCCTCCAAAACGCCCGGGTACCGGCCCAGTTCCGACGTCTGCAACGAGATCCTCGACATCCTCGGCAAAACGAAGCGCTTTCAGGAACTCCACCAAGTGCTCGACGAAATGTCAAAGAGGGAGGGACTCATCGACGAAGCCATATTCGGCACCCTGCTTCGTAGGTTCGTGGGCGCTCATAAAGTTGACGAAGCGATTCACTTATTCCACCGAAGGAACGAGTTCGGTTTGGAGCTAGGTTCGGAGGCTTTTCGTACACTCTTGATGTGGCTCTGCAGGTACAAGCACGTGGAAGACGCGGAAGCGTTGTTTCACGGTGTGATGAAGAAGGATTTAACGTTTCGTCCCGATATAAAGACGTGGAACGTGATTCTCAATGGTTGGTGTGTGTTGGGGAACGTGCATGAGGCGAAGAGGGTGTGGAGAGACATAGTGGGTTCTCCATGCAAGCCTGATGTATTCACGTACGGAACCTTCATCAAGGCGTTGACAAAGAAAGGGAAACTTGGAACAGCGCTGAGGTTGTTCCGTGGCATGTGTGACAAGGGTTGTAAACCTGATGTTGTGATATGCAACTGCATCATTGATGCTCTTTGTTTCAAGAAGAGGGTTCCTGAGGCGTTGGAGGTTTTCCGTGAGATGGGTGAGCGAGGTTGCGAACCGAATGTGGGTACTTACAATACGGTTATTAAGTGCATGTGCAAGATACGGCGAATGGAGAAGGTGTATGAGCTGGTTGGTGAGATGGAGAGGAGGAGGGGGAGTTGCTTGCCTAATGATGTTACTTATTGTTACTTGCTCAAGTCGTTGAAGGAGCCGGGGGAAGTTCGCGGGGTTTTGGAGAGGATGGAGAGAAATGGGTGTGGCATGAATGATGATGTTTATAACTTGGTGTTGAGGTTGTACATGAAATGGGATGATGAGGATGGAGTGAGGCGAACGTGGGAAGGAATGGAGAGGAGTGGATGGGGGCCGGATAGGAGATCGTATACCATCATGATTCATGAGCACTTTGAGAAAGGGAGAGTAAAGGATGCAATGCGTTATTTTGGGGAGATGACATCTAAGGGAATGGTGCCAGAGCCAAGGACGGAGAAGTTAGTAAGTTCCATGAACATTCGGGTGAAGGGGAGGACAGAAAAACAGGAAGACCTGGAATCATGTTGCCTCATGGGTGAAGAGCTGGGTTTCTTTCAGGATATCCGAAAGACCGTGCTTATGATGAAGGACATCGCAGTTCAATTGGAGAAAGACAACCTCTCTGACGAGGTGAAGGAACTGGAAGACGCGGTTATTGAGTTAGTGGGACTATCTGAACTCAGTGTACAATTTTCATCATCAGTTCAAGCTTTTGCCAACAGATACCAGCCTGGAGAACAGTTcactaattttaacaagattTTTGAGGATGAACTTTCCAAGTTTAGGGCCAACCAATCTTCAGATCTTTCTAAAAATTCGTTAATACGCCAATTTAAGGAAGCTGTGTGGAATGTTCATCATGCGGGACAGCCAATGCCAGGTGAAGAGCAGGAGGATATTGTAATGACCAGTACCCagtctaatattttaaatgttaccTGTCCATTGACTGGAAAACCTGTCACTGAGCTTGTGGAACCAGTTCGCAGCATGGAATGTAGGCACatttatgaaaagaaagtaataatGCAATATTTGAAGTCAAAGCAACACCATGGTCAATGCCCAATATCAGGTTGCCCAAAGATATTGCAGGCAGATAAGCTGGTGCAAGATCCGTTGTTACTGATTGAGATTGATGAAATGCGCAAAATGAACAAAGAAAATGACGTAGAAGATTATACCATGCTTGATGAAGATTAG 2112 0.4711 MAYTIRARRRVYEGIFQTLFNVKSSSPRFVHSCPAALIQNLLKFRRDKPTEQMERALDQCGLDLNDDLVLSVLRRHRSDWRPAHVFFNWASKTPGYRPSSDVCNEILDILGKTKRFQELHQVLDEMSKREGLIDEAIFGTLLRRFVGAHKVDEAIHLFHRRNEFGLELGSEAFRTLLMWLCRYKHVEDAEALFHGVMKKDLTFRPDIKTWNVILNGWCVLGNVHEAKRVWRDIVGSPCKPDVFTYGTFIKALTKKGKLGTALRLFRGMCDKGCKPDVVICNCIIDALCFKKRVPEALEVFREMGERGCEPNVGTYNTVIKCMCKIRRMEKVYELVGEMERRRGSCLPNDVTYCYLLKSLKEPGEVRGVLERMERNGCGMNDDVYNLVLRLYMKWDDEDGVRRTWEGMERSGWGPDRRSYTIMIHEHFEKGRVKDAMRYFGEMTSKGMVPEPRTEKLVSSMNIRVKGRTEKQEDLESCCLMGEELGFFQDIRKTVLMMKDIAVQLEKDNLSDEVKELEDAVIELVGLSELSVQFSSSVQAFANRYQPGEQFTNFNKIFEDELSKFRANQSSDLSKNSLIRQFKEAVWNVHHAGQPMPGEEQEDIVMTSTQSNILNVTCPLTGKPVTELVEPVRSMECRHIYEKKVIMQYLKSKQHHGQCPISGCPKILQADKLVQDPLLLIEIDEMRKMNKENDVEDYTMLDED 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1177 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Ssu8g1177 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Ssu8g1177 703 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 1 475 - -
Ssu8g1177 703 Pfam PPR repeat family 205 253 IPR002885 -
Ssu8g1177 703 Pfam PPR repeat family 275 324 IPR002885 -
Ssu8g1177 703 TIGRFAM PPR: pentatricopeptide repeat domain 383 415 IPR002885 -
Ssu8g1177 703 TIGRFAM PPR: pentatricopeptide repeat domain 418 449 IPR002885 -
Ssu8g1177 703 TIGRFAM PPR: pentatricopeptide repeat domain 314 344 IPR002885 -
Ssu8g1177 703 TIGRFAM PPR: pentatricopeptide repeat domain 278 312 IPR002885 -
Ssu8g1177 703 TIGRFAM PPR: pentatricopeptide repeat domain 209 242 IPR002885 -
Ssu8g1177 703 TIGRFAM PPR: pentatricopeptide repeat domain 243 277 IPR002885 -
Ssu8g1177 703 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 475 - -
Ssu8g1177 703 CDD SPL-RING_NSE2 616 684 IPR004181 GO:0008270
Ssu8g1177 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 341 IPR002885 -
Ssu8g1177 703 Pfam PPR repeat 418 446 IPR002885 -
Ssu8g1177 703 Gene3D Tetratricopeptide repeat domain 340 488 IPR011990 GO:0005515
Ssu8g1177 703 Pfam Zinc-finger of the MIZ type in Nse subunit 602 663 IPR004181 GO:0008270
Ssu8g1177 703 ProSiteProfiles Zinc finger SP-RING-type profile. 599 687 IPR004181 GO:0008270
Ssu8g1177 703 Gene3D Tetratricopeptide repeat domain 36 195 IPR011990 GO:0005515
Ssu8g1177 703 Gene3D Tetratricopeptide repeat domain 269 339 IPR011990 GO:0005515
Ssu8g1177 703 Gene3D Tetratricopeptide repeat domain 196 268 IPR011990 GO:0005515
Ssu8g1177 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 698 IPR013083 -
Ssu8g1177 703 Coils Coil 506 526 - -
Ssu8g1177 703 SUPERFAMILY RING/U-box 616 664 - -
Ssu8g1177 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Ssu8g1177 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1177 Ssu-Chr8 21021900 21034501 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1177 92 476 Glycosyltransferase AT1G05670 25.897 4.88e-36 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1177 - - gmx:100804908 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1177 8 21021900 21034501 Ssu8g1177 8 21021900 21034501 ECH